FN3199-S Chr1 18022928 18022939 0 0 Deletion 11 INTRON HOMO FN3199-S Chr1 32946444 32946444 0 0 Insertion 1 INTERGENIC HET FN3199-S Chr1 34224021 34224023 0 0 Deletion 2 INTERGENIC HET FN3199-S Chr1 36938070 G-T 0 0 Single Base Substitution 0 INTRON HET FN3199-S Chr1 37356987 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr1 39992773 C-T 0 0 Single Base Substitution 0 INTRON HET FN3199-S Chr1 4097612 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr1 41159833 T-C 0 0 Single Base Substitution 0 START_GAINED HET FN3199-S Chr1 8924753 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g15840 PPR repeat containing protein, expressed FN3199-S Chr10 14035188 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr10 22918128 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr10 3219097 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr11 18566870 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3199-S Chr11 27858617 Chr1 3226163 0 Translocation 0 LOC_Os01g06790 disease resistance protein, putative, expressed FN3199-S Chr12 12629589 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3199-S Chr12 16034199 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr12 8076483 8076483 0 0 Insertion 73 frameshift_variant HET LOC_Os12g14220 expressed protein FN3199-S Chr12 8640153 Chr4 2526652 0 Translocation 0 FN3199-S Chr2 11120345 11120346 0 0 Deletion 1 upstream_gene_variant HET FN3199-S Chr2 15144643 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr2 15144646 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr2 16492894 16492897 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os02g27850 retrotransposon protein, putative, unclassified, expressed FN3199-S Chr2 26485506 26485506 0 0 Insertion 15 upstream_gene_variant HET FN3199-S Chr2 31401056 31401058 0 0 Deletion 2 downstream_gene_variant HET FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13840 citrate synthase, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13850 leucine-rich repeat-containing protein kinase family protein, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13860 expressed protein FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13870 aquaporin protein, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13880 expressed protein FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13890 FYVE zinc finger domain containing protein, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13900 BES1/BZR1 homolog protein, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13910 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13920 retrotransposon protein, putative, unclassified, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13930 expressed protein FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13940 expressed protein FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13950 NHL repeat-containing protein, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13960 spotted leaf 11, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13965 lectin protein kinase family protein, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13970 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13980 expressed protein FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g13990 U2 small nuclear ribonucleoprotein A, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g14000 actin-related protein 2/3 complex subunit 3, putative, expressed FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g14020 expressed protein FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g14030 hypothetical protein FN3199-S Chr2 7481001 7668000 0 0 Deletion 186999 LOC_Os02g15620 CAPIP1, putative, expressed FN3199-S Chr3 11157155 11157155 0 0 Insertion 32 upstream_gene_variant HET FN3199-S Chr3 13037299 13061195 0 0 Inversion 23896 FN3199-S Chr3 13039678 13061215 0 0 Inversion 21537 LOC_Os03g22620 terpene synthase family, metal binding domain containing protein, expressed FN3199-S Chr3 13059010 A-G 0 0 Single Base Substitution 0 INTRON HET FN3199-S Chr3 13134759 13134764 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os03g22740 nucleolar protein NOP5-1, putative, expressed FN3199-S Chr3 20394766 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g36760 expressed protein FN3199-S Chr3 23123639 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3199-S Chr3 26291189 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3199-S Chr3 26958938 26958945 0 0 Deletion 7 UTR_3_PRIME HOMO FN3199-S Chr3 28043010 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3199-S Chr3 29218789 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr3 32987936 32987938 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os03g57920 AN1-like zinc finger domain containing protein, expressed FN3199-S Chr3 34395775 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr4 13347826 13347831 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os04g23360 retrotransposon protein, putative, unclassified, expressed FN3199-S Chr4 16088435 16088442 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os04g27220 transposon protein, putative, unclassified, expressed FN3199-S Chr4 18792746 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g31420 retrotransposon protein, putative, unclassified, expressed FN3199-S Chr4 19595363 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3199-S Chr4 24832135 24832137 0 0 Deletion 2 INTERGENIC HET FN3199-S Chr4 28646618 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3199-S Chr4 32468023 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr4 34215469 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr4 6856181 6856181 0 0 Insertion 1 upstream_gene_variant HET FN3199-S Chr5 22502562 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3199-S Chr5 24990364 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr5 5719999 A-T 0 0 Single Base Substitution 0 INTRON HET FN3199-S Chr5 9965887 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN3199-S Chr6 12194643 12194644 0 0 Deletion 1 INTERGENIC HOMO FN3199-S Chr6 15246048 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr6 17097676 17097679 0 0 Deletion 3 INTERGENIC HOMO FN3199-S Chr6 17432717 17432719 0 0 Deletion 2 INTERGENIC HET FN3199-S Chr6 18629143 18629144 0 0 Deletion 1 downstream_gene_variant HET FN3199-S Chr6 19777890 19777890 0 0 Insertion 1 upstream_gene_variant HET FN3199-S Chr6 5198917 5198920 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os06g10160 tyrosine protein kinase domain containing protein, putative, expressed FN3199-S Chr6 5443829 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr6 5449824 Chr3 24338834 0 Translocation 0 LOC_Os06g10560 leaf senescence related protein, putative, expressed FN3199-S Chr6 5451362 Chr3 24338829 0 Translocation 0 LOC_Os06g10560 leaf senescence related protein, putative, expressed FN3199-S Chr6 5718500 5718502 0 0 Deletion 2 INTERGENIC HET FN3199-S Chr7 18603541 18603542 0 0 Deletion 1 INTERGENIC HET FN3199-S Chr7 28647365 28647393 0 0 Deletion 28 upstream_gene_variant HET FN3199-S Chr7 29575198 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr8 11002301 11002318 0 0 Deletion 17 downstream_gene_variant HET FN3199-S Chr8 12324413 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3199-S Chr8 13361582 Chr3 20015247 0 Translocation 0 FN3199-S Chr8 13361586 Chr3 20013315 0 Translocation 0 FN3199-S Chr8 15064310 15064349 0 0 Deletion 39 inframe_deletion HET LOC_Os08g24880 EDM2, putative, expressed FN3199-S Chr8 26742083 T-A 0 0 Single Base Substitution 0 INTRON HET FN3199-S Chr8 27337795 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr8 5393980 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3199-S Chr8 9469715 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g15570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3199-S Chr9 10455630 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3199-S Chr9 11462680 11462697 0 0 Deletion 17 INTERGENIC HET