FN3200-S Chr1 10524071 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr1 13714811 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3200-S Chr1 14938796 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr1 15826570 A-T 0 0 Single Base Substitution 0 INTRON HET FN3200-S Chr1 29585355 29585364 0 0 Deletion 9 INTERGENIC HET FN3200-S Chr1 31952819 31952820 0 0 Deletion 1 upstream_gene_variant HET FN3200-S Chr1 35339401 35339401 0 0 Insertion 28 intergenic_region HET FN3200-S Chr1 3578479 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g07500 alliin lyase precursor, putative, expressed FN3200-S Chr1 3578480 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g07500 alliin lyase precursor, putative, expressed FN3200-S Chr1 35896812 35896813 0 0 Deletion 1 INTERGENIC HET FN3200-S Chr1 37053968 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3200-S Chr1 38875578 38875578 0 0 Insertion 2 INTERGENIC HET FN3200-S Chr1 6178812 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3200-S Chr10 12357783 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3200-S Chr10 15808726 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3200-S Chr10 19677812 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3200-S Chr10 19718817 C-T 0 0 Single Base Substitution 0 INTRON HET FN3200-S Chr10 4629111 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr10 6441113 6441114 0 0 Deletion 1 frameshift_variant HET LOC_Os10g11672 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3200-S Chr10 7840793 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr11 15767188 15767189 0 0 Deletion 1 downstream_gene_variant HET FN3200-S Chr11 21210026 21210026 0 0 Insertion 1 downstream_gene_variant HET FN3200-S Chr11 22722918 22723009 0 0 Deletion 91 upstream_gene_variant HET FN3200-S Chr11 22919283 Chr8 24226575 0 Translocation 0 FN3200-S Chr11 22919287 Chr8 24226577 0 Translocation 0 FN3200-S Chr12 14430621 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr12 14995782 Chr11 6169080 0 Translocation 0 FN3200-S Chr12 2494023 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g05450 retrotransposon protein, putative, unclassified, expressed FN3200-S Chr12 25155050 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3200-S Chr12 27132452 27132462 0 0 Deletion 10 UTR_3_PRIME HET FN3200-S Chr2 10450231 A-G 0 0 Single Base Substitution 0 INTRON HET FN3200-S Chr2 12409833 12409833 0 0 Insertion 9 upstream_gene_variant HET FN3200-S Chr2 14988685 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr2 18040580 18040580 0 0 Insertion 32 intron_variant HET FN3200-S Chr2 18811396 18811408 0 0 Deletion 12 upstream_gene_variant HET FN3200-S Chr2 1984355 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr2 27636509 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3200-S Chr2 30570679 30570679 0 0 Insertion 1 upstream_gene_variant HET FN3200-S Chr2 32257534 33198207 0 0 Inversion 940673 LOC_Os02g54150 SAC domain containing protein, putative, expressed FN3200-S Chr2 32257552 33198237 0 0 Inversion 940685 LOC_Os02g54150 SAC domain containing protein, putative, expressed FN3200-S Chr2 33879678 C-T 0 0 Single Base Substitution 0 INTRON HET FN3200-S Chr2 35510836 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3200-S Chr2 4704590 4704591 0 0 Deletion 1 INTERGENIC HET FN3200-S Chr2 7316647 7316649 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os02g13640 protein phosphatase 1 regulatory subunit SDS22, putative, expressed FN3200-S Chr2 9682827 9682827 0 0 Insertion 1 upstream_gene_variant HET FN3200-S Chr3 10700603 C-T 0 0 Single Base Substitution 0 INTRON HET FN3200-S Chr3 12834142 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr3 12834143 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr3 34834805 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr3 4256113 4256116 0 0 Deletion 3 upstream_gene_variant HET FN3200-S Chr4 10292766 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g18610 retrotransposon protein, putative, Ty3-gypsy subclass FN3200-S Chr4 13767816 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr4 15452063 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr4 25970355 25970355 0 0 Insertion 1 upstream_gene_variant HET FN3200-S Chr4 31655346 31655348 0 0 Deletion 2 INTERGENIC HET FN3200-S Chr4 33184996 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr4 35102347 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr4 4574077 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr4 4704221 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr4 5456370 5456370 0 0 Insertion 1 upstream_gene_variant HET FN3200-S Chr4 8397736 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g14930 retrotransposon protein, putative, Ty1-copia subclass FN3200-S Chr4 9571002 9571003 0 0 Deletion 1 upstream_gene_variant HET FN3200-S Chr5 12522477 12522478 0 0 Deletion 1 intergenic_region HET FN3200-S Chr5 1272419 1272423 0 0 Deletion 4 INTERGENIC HOMO FN3200-S Chr5 12862337 12862338 0 0 Deletion 1 upstream_gene_variant HET FN3200-S Chr5 13527188 13527188 0 0 Insertion 1 upstream_gene_variant HET FN3200-S Chr5 16520963 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr5 18183998 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3200-S Chr5 18260323 T-C 0 0 Single Base Substitution 0 INTRON HET FN3200-S Chr5 20355402 20355404 0 0 Deletion 2 frameshift_variant HET LOC_Os05g34340 retrotransposon protein, putative, Ty3-gypsy subclass FN3200-S Chr5 21578432 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g36940 retrotransposon protein, putative, unclassified, expressed FN3200-S Chr5 2351320 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr5 28195865 28195865 0 0 Insertion 12 INTERGENIC HET FN3200-S Chr6 16716694 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os06g29280 retrotransposon protein, putative, unclassified FN3200-S Chr6 20318125 20318132 0 0 Deletion 7 upstream_gene_variant HET FN3200-S Chr6 23883332 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr6 28367322 A-G 0 0 Single Base Substitution 0 INTRON HET FN3200-S Chr6 3443963 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr6 9639783 9639783 0 0 Insertion 44 intron_variant HET FN3200-S Chr7 23373804 A-C 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN3200-S Chr7 23746668 23746670 0 0 Deletion 2 UTR_5_PRIME HOMO FN3200-S Chr7 8446354 8446355 0 0 Deletion 1 INTERGENIC HOMO FN3200-S Chr8 12558939 12558940 0 0 Deletion 1 frameshift_variant HET LOC_Os08g20967 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3200-S Chr8 12782263 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3200-S Chr8 12784001 12816000 0 0 Deletion 31999 LOC_Os08g21460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3200-S Chr8 12784001 12816000 0 0 Deletion 31999 LOC_Os08g21470 retrotransposon, putative, centromere-specific, expressed FN3200-S Chr8 12784001 12816000 0 0 Deletion 31999 LOC_Os08g21474 retrotransposon, putative, centromere-specific FN3200-S Chr8 12784001 12816000 0 0 Deletion 31999 LOC_Os08g21480 retrotransposon protein, putative, Ty3-gypsy subclass FN3200-S Chr8 12784001 12816000 0 0 Deletion 31999 LOC_Os08g21490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3200-S Chr8 12784001 12816000 0 0 Deletion 31999 LOC_Os08g21500 retrotransposon, putative, centromere-specific FN3200-S Chr8 12784001 12816000 0 0 Deletion 31999 LOC_Os08g25220 retrotransposon protein, putative, unclassified, expressed FN3200-S Chr8 21310522 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3200-S Chr8 22120046 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr8 22337587 22337607 0 0 Deletion 20 INTERGENIC HET FN3200-S Chr8 2233762 Chr5 28810796 0 Translocation 0 FN3200-S Chr8 4140548 C-A 0 0 Single Base Substitution 0 INTRON HET FN3200-S Chr9 11346280 11346312 0 0 Deletion 32 INTERGENIC HET FN3200-S Chr9 12679862 12679862 0 0 Insertion 1 frameshift_variant HET LOC_Os09g21020 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3200-S Chr9 19954659 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3200-S Chr9 5346406 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr9 5406516 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr9 5406517 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3200-S Chr9 5725664 5725665 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os09g10480 retrotransposon protein, putative, Ty3-gypsy subclass