FN3201-S Chr1 21565867 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr1 32723184 32723184 0 0 Insertion 1 downstream_gene_variant HET FN3201-S Chr1 33858130 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3201-S Chr1 39866290 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr1 42964162 T-C 0 0 Single Base Substitution 0 INTRON HET FN3201-S Chr1 7340897 T-C 0 0 Single Base Substitution 0 INTRON HET FN3201-S Chr10 12402023 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr10 15212521 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr10 20498324 20498327 0 0 Deletion 3 CODON_DELETION HOMO LOC_Os10g38360 glutathione S-transferase, putative, expressed FN3201-S Chr10 7212517 7212518 0 0 Deletion 1 upstream_gene_variant HET FN3201-S Chr10 7766267 A-T 0 0 Single Base Substitution 0 INTRON HET FN3201-S Chr10 7861315 7861337 0 0 Deletion 22 upstream_gene_variant HET FN3201-S Chr10 8767805 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr11 10084605 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g17954 transposon protein, putative, Pong sub-class, expressed FN3201-S Chr11 14258973 14258973 0 0 Insertion 6 intergenic_region HET FN3201-S Chr11 14298884 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3201-S Chr11 15401580 Chr4 18466158 0 Translocation 0 FN3201-S Chr11 22547435 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr11 22547436 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr11 23310718 23310720 0 0 Deletion 2 INTRON HOMO FN3201-S Chr11 24909714 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3201-S Chr11 24909715 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3201-S Chr11 2517907 2517914 0 0 Deletion 7 INTRON HOMO FN3201-S Chr11 26022006 26022033 0 0 Deletion 27 upstream_gene_variant HET FN3201-S Chr11 28105240 28105240 0 0 Insertion 2 upstream_gene_variant HET FN3201-S Chr11 6177661 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g11170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3201-S Chr11 7097219 Chr6 1748308 0 Translocation 0 FN3201-S Chr12 10883216 Chr2 25322159 0 Translocation 0 FN3201-S Chr12 16880815 16880821 0 0 Deletion 6 upstream_gene_variant HET FN3201-S Chr12 20261963 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3201-S Chr12 3549348 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g07220 bacterial transferase hexapeptide domain containing protein, expressed FN3201-S Chr12 5223266 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr12 6160266 Chr5 20331531 0 Translocation 0 FN3201-S Chr2 13887698 13887705 0 0 Deletion 7 upstream_gene_variant HET FN3201-S Chr2 23037626 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g38110 transposon protein, putative, unclassified, expressed FN3201-S Chr2 25339013 T-C 0 0 Single Base Substitution 0 INTRON HET FN3201-S Chr2 30545665 30545670 0 0 Deletion 5 INTRON HOMO FN3201-S Chr2 32559105 32559107 0 0 Deletion 2 UTR_5_PRIME HOMO FN3201-S Chr2 33333223 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr3 11000223 11000223 0 0 Insertion 1 upstream_gene_variant HET FN3201-S Chr3 19608220 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr3 23600308 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr3 33127137 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3201-S Chr3 4666475 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g08980 expressed protein FN3201-S Chr3 4932893 4932894 0 0 Deletion 1 upstream_gene_variant HET FN3201-S Chr4 10440282 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g18770 retrotransposon protein, putative, unclassified, expressed FN3201-S Chr4 11982837 11982838 0 0 Deletion 1 intron_variant HET FN3201-S Chr4 14481660 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr4 2010043 2010044 0 0 Deletion 1 upstream_gene_variant HET FN3201-S Chr4 2282467 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3201-S Chr4 23983731 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr4 30480017 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr4 3105100 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g06000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3201-S Chr4 32893831 32893832 0 0 Deletion 1 upstream_gene_variant HET FN3201-S Chr4 34286522 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr4 7251710 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3201-S Chr5 12512133 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr5 14995917 14995917 0 0 Insertion 1 INTERGENIC HOMO FN3201-S Chr5 17139862 17139885 0 0 Deletion 23 downstream_gene_variant HET FN3201-S Chr5 28177450 T-G 0 0 Single Base Substitution 0 INTRON HET FN3201-S Chr5 29750609 29750609 0 0 Insertion 8 upstream_gene_variant HET FN3201-S Chr5 4477189 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr5 6519464 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3201-S Chr5 8833533 8833535 0 0 Deletion 2 downstream_gene_variant HET FN3201-S Chr6 12318935 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g21330 ABB1 - Ankyrin repeat region with 2 Bric-a-Brac, Tramtrack, Broad Complex BTB domains, expressed FN3201-S Chr6 1938914 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3201-S Chr6 2565028 2565032 0 0 Deletion 4 upstream_gene_variant HET FN3201-S Chr6 26320464 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr6 26464259 Chr3 19845523 0 Translocation 0 FN3201-S Chr6 29376763 29376764 0 0 Deletion 1 upstream_gene_variant HET FN3201-S Chr6 3704699 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr7 12166680 12166680 0 0 Insertion 2 intergenic_region HET FN3201-S Chr7 13781043 Chr3 17297502 0 Translocation 0 FN3201-S Chr7 18747133 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr7 18984209 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3201-S Chr7 19759102 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr7 21432652 21432654 0 0 Deletion 2 INTERGENIC HET FN3201-S Chr7 3128359 3128359 0 0 Insertion 68 upstream_gene_variant HET FN3201-S Chr7 7091064 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr7 8555456 8555456 0 0 Insertion 2 INTERGENIC HET FN3201-S Chr7 8642206 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3201-S Chr8 13666597 C-G 0 0 Single Base Substitution 0 INTRON HET FN3201-S Chr8 1522873 1522878 0 0 Deletion 5 INTERGENIC HOMO FN3201-S Chr8 5173804 Chr6 7992792 0 Translocation 0 FN3201-S Chr8 6082318 6082318 0 0 Insertion 1 upstream_gene_variant HET FN3201-S Chr9 11649533 11649533 0 0 Insertion 22 upstream_gene_variant HET FN3201-S Chr9 14594674 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3201-S Chr9 17915637 17915641 0 0 Deletion 4 INTERGENIC HOMO FN3201-S Chr9 1795600 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g03610 flowering time control protein FCA, putative, expressed FN3201-S Chr9 1799261 1929995 0 0 Inversion 130734 LOC_Os09g03610 flowering time control protein FCA, putative, expressed FN3201-S Chr9 1799273 Chr3 19845166 0 Translocation 0 LOC_Os09g03610 flowering time control protein FCA, putative, expressed FN3201-S Chr9 1800564 Chr6 26464265 0 Translocation 0 FN3201-S Chr9 1800569 1929994 0 0 Inversion 129425 FN3201-S Chr9 18725376 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3201-S Chr9 1930287 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3201-S Chr9 21516119 C-A 0 0 Single Base Substitution 0 INTRON HET FN3201-S Chr9 2472431 A-G 0 0 Single Base Substitution 0 INTRON HET FN3201-S Chr9 5665274 5665275 0 0 Deletion 1 INTERGENIC HOMO FN3201-S Chr9 5784965 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g10600 enoyl-acyl-carrier-protein reductase NADH, chloroplast precursor, expressed FN3201-S Chr9 82311 82311 0 0 Insertion 3 upstream_gene_variant HET