FN3203-S Chr1 15212957 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr1 24157287 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42490 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN3203-S Chr1 26991086 26991088 0 0 Deletion 2 upstream_gene_variant HET FN3203-S Chr1 30910179 T-A 0 0 Single Base Substitution 0 INTRON HET FN3203-S Chr1 33383629 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3203-S Chr1 33576953 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr1 37685267 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr1 41704211 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr1 7630168 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr10 10684285 10684289 0 0 Deletion 4 INTERGENIC HET FN3203-S Chr10 12117775 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr10 13730354 13730360 0 0 Deletion 6 CODON_DELETION HET LOC_Os10g26420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3203-S Chr10 16199476 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr10 16199477 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr10 20074557 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3203-S Chr10 3148038 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr11 19817905 Chr8 19393149 0 Translocation 0 FN3203-S Chr11 27587162 Chr2 15153914 0 Translocation 0 FN3203-S Chr11 27587169 Chr2 15152563 0 Translocation 0 LOC_Os02g25860 glutelin, putative, expressed FN3203-S Chr11 28210823 28210825 0 0 Deletion 2 upstream_gene_variant HET FN3203-S Chr11 5536240 5536240 0 0 Insertion 64 upstream_gene_variant HET FN3203-S Chr12 11005101 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr12 1923839 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3203-S Chr12 20074657 Chr5 1844936 0 Translocation 0 LOC_Os12g33170 retrotransposon protein, putative, unclassified FN3203-S Chr12 21737679 21737679 0 0 Insertion 57 downstream_gene_variant HET FN3203-S Chr12 9263450 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr12 9558605 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr2 17658172 T-C 0 0 Single Base Substitution 0 START_LOST HET LOC_Os02g29660 retrotransposon protein, putative, Ty3-gypsy subclass FN3203-S Chr2 1896192 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g04300 retrotransposon protein, putative, unclassified, expressed FN3203-S Chr2 19465495 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr2 2366162 2366163 0 0 Deletion 1 upstream_gene_variant HET FN3203-S Chr2 26782167 26782177 0 0 Deletion 10 INTRON HET FN3203-S Chr2 32622693 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr3 13347755 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr3 17860119 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3203-S Chr3 24258986 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr3 30778904 30778905 0 0 Deletion 1 INTRON HET FN3203-S Chr3 31974354 Chr1 33760437 0 Translocation 0 LOC_Os03g56120 expressed protein FN3203-S Chr3 36156177 36156177 0 0 Insertion 6 downstream_gene_variant HET FN3203-S Chr4 14292704 14292704 0 0 Insertion 2 intergenic_region HET FN3203-S Chr4 14408897 14408898 0 0 Deletion 1 upstream_gene_variant HET FN3203-S Chr4 16493128 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr4 16493129 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr4 20317456 Chr1 16513483 0 Translocation 0 FN3203-S Chr4 29390279 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr4 4187104 4187108 0 0 Deletion 4 downstream_gene_variant HET FN3203-S Chr5 15928692 15928711 0 0 Deletion 19 upstream_gene_variant HET FN3203-S Chr5 15988731 C-T 0 0 Single Base Substitution 0 INTRON HET FN3203-S Chr5 21538618 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr5 21989314 21989315 0 0 Deletion 1 frameshift_variant HET LOC_Os05g37580 retrotransposon protein, putative, unclassified, expressed FN3203-S Chr5 29396274 29396283 0 0 Deletion 9 inframe_insertion HET LOC_Os05g51250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3203-S Chr5 756208 756208 0 0 Insertion 37 frameshift_variant HET LOC_Os05g02340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3203-S Chr5 9430015 Chr1 40606666 0 Translocation 0 FN3203-S Chr6 15366680 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr6 16260053 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr6 19917431 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr6 20495097 20495104 0 0 Deletion 7 INTERGENIC HOMO FN3203-S Chr6 22461536 22461541 0 0 Deletion 5 upstream_gene_variant HET FN3203-S Chr6 2582202 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3203-S Chr6 29542023 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr6 6344263 6344264 0 0 Deletion 1 UTR_3_PRIME HOMO FN3203-S Chr7 11139930 11139930 0 0 Insertion 75 upstream_gene_variant HET FN3203-S Chr7 16314652 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3203-S Chr7 21966488 21966489 0 0 Deletion 1 INTERGENIC HET FN3203-S Chr7 3930972 3930972 0 0 Insertion 3 upstream_gene_variant HET FN3203-S Chr7 9667410 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr8 1608019 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g03430 extracellular ligand-gated ion channel, putative, expressed FN3203-S Chr8 1791463 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3203-S Chr8 3659229 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3203-S Chr8 3947523 3947524 0 0 Deletion 1 upstream_gene_variant HET FN3203-S Chr8 6721897 6721909 0 0 Deletion 12 downstream_gene_variant HET FN3203-S Chr9 15104153 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3203-S Chr9 15328018 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr9 1778634 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr9 21977974 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr9 3234114 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3203-S Chr9 6539380 G-A 0 0 Single Base Substitution 0 INTRON HET FN3203-S Chr9 9329713 9329713 0 0 Insertion 18 intron_variant HET