FN3204-S Chr1 14114443 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr1 34103710 34103710 0 0 Insertion 10 downstream_gene_variant HET FN3204-S Chr1 34967239 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr1 40714769 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3204-S Chr1 4354515 4354515 0 0 Insertion 20 upstream_gene_variant HET FN3204-S Chr10 118047 118053 0 0 Deletion 6 INTRON HOMO FN3204-S Chr10 1350381 1380449 0 0 Inversion 30068 FN3204-S Chr10 1350389 1380457 0 0 Inversion 30068 FN3204-S Chr10 17246635 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr10 17246636 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr10 20858079 20858088 0 0 Deletion 9 INTERGENIC HET FN3204-S Chr10 4248438 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25700 tropinone reductase, putative, expressed FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25720 cytokinin-N-glucosyltransferase 1, putative, expressed FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25740 expressed protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25750 expressed protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25760 expressed protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25770 expressed protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25780 PB1 domain containing protein, expressed FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25810 retrotransposon protein, putative, Ty1-copia subclass FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25820 retrotransposon protein, putative, unclassified FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25830 retrotransposon protein, putative, unclassified, expressed FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25840 expressed protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25850 retrotransposon protein, putative, unclassified, expressed FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25860 protein Kinase, putative, expressed FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25870 hypothetical protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25874 hypothetical protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25880 expressed protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25890 hypothetical protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25900 hAT dimerisation domain containing protein, putative FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25910 expressed protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25920 transcription factor-related, putative, expressed FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25930 retrotransposon protein, putative, unclassified FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25940 retrotransposon protein, putative, unclassified FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25950 retrotransposon protein, putative, unclassified, expressed FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25970 hypothetical protein FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g25980 phospholipid-transporting ATPase 2, putative, expressed FN3204-S Chr11 14660001 14831000 0 0 Deletion 170999 LOC_Os11g37840 expressed protein FN3204-S Chr11 16159965 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN3204-S Chr11 18214172 18214173 0 0 Deletion 1 upstream_gene_variant HET FN3204-S Chr11 21327555 21327555 0 0 Insertion 1 upstream_gene_variant HET FN3204-S Chr11 27380200 C-T 0 0 Single Base Substitution 0 INTRON HET FN3204-S Chr11 3185664 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr12 15106888 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr12 2576831 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr12 3693831 3693855 0 0 Deletion 24 INTERGENIC HOMO FN3204-S Chr12 6077983 6077983 0 0 Insertion 6 upstream_gene_variant HET FN3204-S Chr12 7244519 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr12 9453348 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3204-S Chr2 14819257 14819258 0 0 Deletion 1 downstream_gene_variant HET FN3204-S Chr2 20242257 G-C 0 0 Single Base Substitution 0 INTRON HET FN3204-S Chr2 21517943 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr2 25319069 25319095 0 0 Deletion 26 upstream_gene_variant HET FN3204-S Chr2 2586433 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr2 30039051 C-T 0 0 Single Base Substitution 0 INTRON HET FN3204-S Chr2 35446630 35446636 0 0 Deletion 6 INTRON HET FN3204-S Chr3 1423224 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr3 17111014 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g30000 glycosyl transferase 8 domain containing protein, putative, expressed FN3204-S Chr3 24545904 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g43810 helix-loop-helix DNA-binding domain containing protein, expressed FN3204-S Chr3 30851576 30851578 0 0 Deletion 2 INTERGENIC HET FN3204-S Chr3 32586268 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr3 33080633 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g58100 pentatricopeptide, putative, expressed FN3204-S Chr3 34343377 34343389 0 0 Deletion 12 UTR_3_PRIME HOMO FN3204-S Chr3 34452080 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3204-S Chr3 4974271 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr3 5135821 5328748 0 0 Inversion 192927 LOC_Os03g10469 glycosyl hydrolase family 10 protein, putative, expressed FN3204-S Chr3 5135822 5328749 0 0 Inversion 192927 LOC_Os03g10469 glycosyl hydrolase family 10 protein, putative, expressed FN3204-S Chr3 7760508 G-C 0 0 Single Base Substitution 0 INTRON HET FN3204-S Chr3 7938081 7938082 0 0 Deletion 1 upstream_gene_variant HET FN3204-S Chr4 13412945 13431354 0 0 Inversion 18409 FN3204-S Chr4 13744416 13744416 0 0 Insertion 1 splice_donor_variant&intron_variant HET LOC_Os04g24060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3204-S Chr4 24596600 24596608 0 0 Deletion 8 SPLICE_SITE_REGION HOMO FN3204-S Chr4 24799153 24799164 0 0 Deletion 11 INTRON HOMO FN3204-S Chr4 25558151 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr4 34793175 34793178 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os04g58504 choline transporter-related, putative, expressed FN3204-S Chr4 5317419 5317419 0 0 Insertion 43 upstream_gene_variant HET FN3204-S Chr5 11317443 T-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3204-S Chr5 12422397 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3204-S Chr5 14718789 14718805 0 0 Deletion 16 UTR_5_PRIME HOMO FN3204-S Chr5 15499946 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3204-S Chr5 20839318 20839318 0 0 Insertion 69 upstream_gene_variant HET FN3204-S Chr5 2289603 2289603 0 0 Insertion 16 intergenic_region HET FN3204-S Chr5 27924496 27924501 0 0 Deletion 5 FRAME_SHIFT HET LOC_Os05g48720 transposon protein, putative, Mariner sub-class, expressed FN3204-S Chr5 666162 666162 0 0 Insertion 39 intergenic_region HET FN3204-S Chr5 8911276 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g15790 expressed protein FN3204-S Chr6 22047735 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr6 28765656 29086514 0 0 Inversion 320858 LOC_Os06g47510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3204-S Chr6 28765656 29086514 0 0 Inversion 320858 LOC_Os06g48070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3204-S Chr6 4254466 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3204-S Chr6 8683841 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3204-S Chr7 10887714 10887717 0 0 Deletion 3 INTERGENIC HOMO FN3204-S Chr7 14606022 14606024 0 0 Deletion 2 INTERGENIC HOMO FN3204-S Chr7 18250799 18250801 0 0 Deletion 2 upstream_gene_variant HET FN3204-S Chr7 250500 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr7 26332081 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr7 26841027 26841028 0 0 Deletion 1 upstream_gene_variant HET FN3204-S Chr7 27169821 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3204-S Chr7 7900124 7900126 0 0 Deletion 2 upstream_gene_variant HET FN3204-S Chr8 12467996 12467997 0 0 Deletion 1 downstream_gene_variant HET FN3204-S Chr8 15935106 15935106 0 0 Insertion 1 upstream_gene_variant HET FN3204-S Chr8 28203544 28203544 0 0 Insertion 8 upstream_gene_variant HET FN3204-S Chr8 8347863 8347875 0 0 Deletion 12 INTERGENIC HOMO FN3204-S Chr9 5694911 5694934 0 0 Deletion 23 INTERGENIC HET FN3204-S Chr9 8052774 C-T 0 0 Single Base Substitution 0 INTERGENIC HET