FN3205-S Chr1 15800981 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g28200 transposon protein, putative, unclassified, expressed FN3205-S Chr1 27793165 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3205-S Chr1 29798084 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3205-S Chr1 32220399 32220401 0 0 Deletion 2 INTERGENIC HET FN3205-S Chr1 35634409 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3205-S Chr1 8125338 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3205-S Chr1 8125568 8125583 0 0 Deletion 15 INTERGENIC HOMO FN3205-S Chr10 11089878 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3205-S Chr10 12340654 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3205-S Chr10 15761109 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr10 20410491 20410491 0 0 Insertion 1 upstream_gene_variant HET FN3205-S Chr10 21128522 C-G 0 0 Single Base Substitution 0 START_GAINED HOMO FN3205-S Chr10 21186681 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3205-S Chr10 9361416 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr11 11391278 C-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3205-S Chr11 11391279 T-A 0 0 Single Base Substitution 0 START_GAINED HET FN3205-S Chr11 11391283 G-A 0 0 Single Base Substitution 0 START_GAINED HET FN3205-S Chr11 14480752 G-A 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr11 15134517 Chr10 4882462 0 Translocation 0 FN3205-S Chr11 21309989 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3205-S Chr11 23429326 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3205-S Chr11 26244572 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os11g43460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3205-S Chr11 27411338 G-T 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr11 29013921 Chr1 38920196 0 Translocation 0 LOC_Os11g48110 phenylalanine ammonia-lyase, putative, expressed FN3205-S Chr11 29013926 Chr1 38920506 0 Translocation 0 LOC_Os11g48110 phenylalanine ammonia-lyase, putative, expressed FN3205-S Chr12 11596671 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3205-S Chr12 13936907 13936907 0 0 Insertion 1 upstream_gene_variant HET FN3205-S Chr12 19167184 19167184 0 0 Insertion 16 upstream_gene_variant HET FN3205-S Chr12 20437176 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g33910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3205-S Chr12 26423537 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3205-S Chr12 319197 319200 0 0 Deletion 3 INTERGENIC HET FN3205-S Chr12 3375375 3375375 0 0 Insertion 32 upstream_gene_variant HET FN3205-S Chr2 10199560 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3205-S Chr2 15711189 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr2 19266089 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr2 20172946 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr2 20583846 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr2 21579150 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr3 14257037 A-G 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr3 17446582 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr3 17790813 17790814 0 0 Deletion 1 upstream_gene_variant HET FN3205-S Chr3 2534516 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g05225 expressed protein FN3205-S Chr4 15325223 C-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os04g26290 retrotransposon protein, putative, unclassified, expressed FN3205-S Chr4 17456233 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr4 17546461 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr4 19045630 C-T 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr4 20266139 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr4 30579873 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3205-S Chr4 35451434 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr5 10070554 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr5 11263159 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g19390 PPR repeat containing protein, expressed FN3205-S Chr5 14613075 14613075 0 0 Insertion 1 upstream_gene_variant HET FN3205-S Chr5 15544747 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr5 18217872 T-C 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr5 19821819 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr5 20369899 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr5 28106160 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr5 4037531 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g07540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3205-S Chr5 4037532 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g07540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3205-S Chr5 5355149 5355150 0 0 Deletion 1 INTERGENIC HOMO FN3205-S Chr5 7486552 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr5 9969673 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr6 15991610 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g28150 transposon protein, putative, unclassified, expressed FN3205-S Chr6 16231488 16231489 0 0 Deletion 1 INTERGENIC HOMO FN3205-S Chr6 16745240 16745243 0 0 Deletion 3 INTRON HOMO FN3205-S Chr6 20211010 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3205-S Chr6 22479504 22479504 0 0 Insertion 2 upstream_gene_variant HET FN3205-S Chr6 24767033 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr6 25778143 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr6 27242568 27242577 0 0 Deletion 9 INTERGENIC HET FN3205-S Chr6 30943078 30943095 0 0 Deletion 17 INTERGENIC HOMO FN3205-S Chr6 8991290 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr7 10087133 10087137 0 0 Deletion 4 INTERGENIC HOMO FN3205-S Chr7 12148653 12148654 0 0 Deletion 1 intergenic_region HET FN3205-S Chr7 14474491 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr7 19449063 Chr1 12115016 0 Translocation 0 FN3205-S Chr7 20934425 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr7 22539782 G-A 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr7 22707921 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g37860 retrotransposon protein, putative, unclassified, expressed FN3205-S Chr7 22959066 22959068 0 0 Deletion 2 upstream_gene_variant HET FN3205-S Chr7 23781004 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr7 27002524 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g45250 transposon protein, putative, unclassified, expressed FN3205-S Chr7 6814662 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3205-S Chr7 9799179 9799179 0 0 Insertion 2 upstream_gene_variant HET FN3205-S Chr8 10139035 T-C 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr8 10271198 10271199 0 0 Deletion 1 upstream_gene_variant HET FN3205-S Chr8 12099593 12099599 0 0 Deletion 6 INTERGENIC HET FN3205-S Chr8 14338814 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr8 17440802 17440802 0 0 Insertion 2 INTRON HET FN3205-S Chr8 17834544 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3205-S Chr8 4698758 4698762 0 0 Deletion 4 INTERGENIC HOMO FN3205-S Chr8 5887719 T-C 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr8 6593192 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr8 6939792 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr8 7514005 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr9 10581704 10581704 0 0 Insertion 1 upstream_gene_variant HET FN3205-S Chr9 21241978 A-G 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr9 326331 C-G 0 0 Single Base Substitution 0 INTRON HET FN3205-S Chr9 3288363 3288365 0 0 Deletion 2 upstream_gene_variant HET FN3205-S Chr9 8324135 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3205-S Chr9 9360357 9751265 0 0 Inversion 390908 LOC_Os09g15950 expressed protein FN3205-S Chr9 9360360 9751276 0 0 Inversion 390916 LOC_Os09g15950 expressed protein