FN3206-S Chr1 14197949 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr1 14551044 14551044 0 0 Insertion 56 downstream_gene_variant HET FN3206-S Chr1 15132939 G-T 0 0 Single Base Substitution 0 INTRON HET FN3206-S Chr1 18342935 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr1 19347813 19347815 0 0 Deletion 2 INTERGENIC HET FN3206-S Chr1 19644929 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr1 32407123 32407123 0 0 Insertion 2 INTERGENIC HET FN3206-S Chr1 32950792 32950794 0 0 Deletion 2 INTERGENIC HET FN3206-S Chr1 33924538 34099828 0 0 Inversion 175290 LOC_Os01g58680 apurinic endonuclease-redox protein, putative, expressed FN3206-S Chr1 33924538 34099828 0 0 Inversion 175290 LOC_Os01g59000 cytochrome P450, putative, expressed FN3206-S Chr1 33924540 34099839 0 0 Inversion 175299 LOC_Os01g58680 apurinic endonuclease-redox protein, putative, expressed FN3206-S Chr1 33924540 34099839 0 0 Inversion 175299 LOC_Os01g59000 cytochrome P450, putative, expressed FN3206-S Chr1 37261682 37261682 0 0 Insertion 1 frameshift_variant HET LOC_Os01g64150 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3206-S Chr1 39401987 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr1 772706 772732 0 0 Deletion 26 FRAME_SHIFT HET LOC_Os01g02400 protein kinase domain containing protein, expressed FN3206-S Chr10 10704913 10705082 0 0 Inversion 169 FN3206-S Chr10 13638524 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr10 14559211 14559378 0 0 Inversion 167 LOC_Os10g28050 chitinase 2, putative, expressed FN3206-S Chr10 6366909 6366909 0 0 Insertion 2 upstream_gene_variant HET FN3206-S Chr11 14924909 14924914 0 0 Deletion 5 INTERGENIC HOMO FN3206-S Chr11 15085244 15085245 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os11g26360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3206-S Chr11 25113040 25113040 0 0 Insertion 14 upstream_gene_variant HET FN3206-S Chr11 25586232 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr11 3388750 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g06900 amidase family protein, putative, expressed FN3206-S Chr11 6492113 6492113 0 0 Insertion 4 upstream_gene_variant HET FN3206-S Chr12 11237460 11237466 0 0 Deletion 6 INTERGENIC HET FN3206-S Chr12 12246666 12246667 0 0 Deletion 1 INTERGENIC HET FN3206-S Chr12 19238706 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr12 25370365 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr12 5612246 5612251 0 0 Deletion 5 frameshift_variant HET LOC_Os12g10570 ATP synthase subunit beta, putative, expressed FN3206-S Chr12 5633839 5633865 0 0 Deletion 26 intergenic_region HET FN3206-S Chr12 9301612 9301612 0 0 Insertion 60 upstream_gene_variant HET FN3206-S Chr12 9670152 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3206-S Chr2 12003384 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr2 13688076 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr2 17778002 17778002 0 0 Insertion 2 INTERGENIC HET FN3206-S Chr2 20675893 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3206-S Chr2 21836679 21836680 0 0 Deletion 1 upstream_gene_variant HET FN3206-S Chr2 2233850 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g04840 GHMP kinases ATP-binding protein, putative, expressed FN3206-S Chr2 24155518 24155527 0 0 Deletion 9 INTRON HOMO FN3206-S Chr2 24782205 24782215 0 0 Deletion 10 INTRON HOMO FN3206-S Chr2 25626119 25626119 0 0 Insertion 12 upstream_gene_variant HET FN3206-S Chr2 32025504 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3206-S Chr2 32223953 32223954 0 0 Deletion 1 upstream_gene_variant HET FN3206-S Chr3 13441472 13809003 0 0 Inversion 367531 FN3206-S Chr3 16334768 C-T 0 0 Single Base Substitution 0 INTRON HET FN3206-S Chr3 17244567 17588948 0 0 Inversion 344381 LOC_Os03g30870 progesterone 5-beta-reductase, putative, expressed FN3206-S Chr3 17244567 17588949 0 0 Inversion 344382 LOC_Os03g30870 progesterone 5-beta-reductase, putative, expressed FN3206-S Chr3 17588365 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g30870 progesterone 5-beta-reductase, putative, expressed FN3206-S Chr3 17588366 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g30870 progesterone 5-beta-reductase, putative, expressed FN3206-S Chr3 23942107 23942107 0 0 Insertion 1 upstream_gene_variant HET FN3206-S Chr3 29440814 29440816 0 0 Deletion 2 INTERGENIC HET FN3206-S Chr3 30866405 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3206-S Chr3 4161416 4161417 0 0 Deletion 1 INTERGENIC HET FN3206-S Chr3 4531487 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr3 4684508 Chr1 35071531 0 Translocation 0 LOC_Os03g09020 dehydrogenase, putative, expressed FN3206-S Chr3 4684883 Chr1 35071534 0 Translocation 0 LOC_Os03g09020 dehydrogenase, putative, expressed FN3206-S Chr3 5338625 5338625 0 0 Insertion 2 INTERGENIC HET FN3206-S Chr4 12181183 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3206-S Chr4 17436802 17436803 0 0 Deletion 1 intron_variant HET FN3206-S Chr4 27468401 27468421 0 0 Deletion 20 INTERGENIC HET FN3206-S Chr4 31229861 31229861 0 0 Insertion 2 upstream_gene_variant HET FN3206-S Chr4 31298056 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr4 31482677 31482678 0 0 Deletion 1 upstream_gene_variant HET FN3206-S Chr4 34420064 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g57800 BTBN13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed FN3206-S Chr4 6460988 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr4 785489 785489 0 0 Insertion 1 upstream_gene_variant HET FN3206-S Chr4 8371378 8373110 0 0 Inversion 1732 FN3206-S Chr4 8372406 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3206-S Chr4 8372407 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3206-S Chr5 10088856 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr5 10673594 10673597 0 0 Deletion 3 CODON_DELETION HET LOC_Os05g18470 CRAL/TRIO domain containing protein, expressed FN3206-S Chr5 14906059 14906066 0 0 Deletion 7 INTERGENIC HET FN3206-S Chr5 15653345 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr5 23576558 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g40140 retrotransposon protein, putative, unclassified FN3206-S Chr5 24148261 24148544 0 0 Inversion 283 FN3206-S Chr5 27217156 27217364 0 0 Inversion 208 LOC_Os05g47500 MDR-like ABC transporter, putative, expressed FN3206-S Chr5 27807578 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3206-S Chr5 29371149 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g51200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3206-S Chr5 3181348 3181348 0 0 Insertion 1 downstream_gene_variant HET FN3206-S Chr5 4038957 4038958 0 0 Deletion 1 frameshift_variant HET LOC_Os05g07540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3206-S Chr5 4501600 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3206-S Chr5 4501601 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3206-S Chr5 8834510 Chr3 13387694 0 Translocation 0 FN3206-S Chr6 10515233 10515233 0 0 Insertion 1 downstream_gene_variant HET FN3206-S Chr6 13904269 13908401 0 0 Inversion 4132 FN3206-S Chr6 14781485 14781486 0 0 Deletion 1 frameshift_variant HET LOC_Os06g25270 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3206-S Chr6 15799910 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g27880 retrotransposon protein, putative, unclassified, expressed FN3206-S Chr6 18338741 18338741 0 0 Insertion 1 frameshift_variant HET LOC_Os06g31540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3206-S Chr6 20057752 20057762 0 0 Deletion 10 INTERGENIC HOMO FN3206-S Chr6 23919704 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr6 24475241 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr6 24577202 24577353 0 0 Inversion 151 LOC_Os06g41110 tubulin binding cofactor C, putative, expressed FN3206-S Chr6 26720754 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr6 5220116 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr6 5644815 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr7 11097386 11097389 0 0 Deletion 3 INTERGENIC HOMO FN3206-S Chr7 11673723 11673727 0 0 Deletion 4 frameshift_variant HET LOC_Os07g20240 transposon protein, putative, unclassified, expressed FN3206-S Chr7 15933411 15933412 0 0 Deletion 1 upstream_gene_variant HET FN3206-S Chr7 1795177 1795177 0 0 Insertion 4 upstream_gene_variant HET FN3206-S Chr7 21175711 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g35410 TKL_IRAK_DUF26-lc.18 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3206-S Chr7 21192256 21192257 0 0 Deletion 1 upstream_gene_variant HET FN3206-S Chr7 26148710 26148723 0 0 Deletion 13 INTERGENIC HOMO FN3206-S Chr7 9327184 9327189 0 0 Deletion 5 INTERGENIC HET FN3206-S Chr8 11082409 11082414 0 0 Deletion 5 INTERGENIC HET FN3206-S Chr8 14010832 14010833 0 0 Deletion 1 INTERGENIC HET FN3206-S Chr8 16157175 16157176 0 0 Deletion 1 INTERGENIC HET FN3206-S Chr8 2088410 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3206-S Chr8 28320602 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3206-S Chr8 8743079 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g14540 retrotransposon protein, putative, unclassified, expressed FN3206-S Chr8 8743080 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g14540 retrotransposon protein, putative, unclassified, expressed FN3206-S Chr8 8743081 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3206-S Chr9 16912001 16922000 0 0 Deletion 9999 LOC_Os09g27810 retrotransposon protein, putative, unclassified FN3206-S Chr9 16912001 16922000 0 0 Deletion 9999 LOC_Os09g28390 cytochrome P450, putative, expressed FN3206-S Chr9 19038128 19038128 0 0 Insertion 6 upstream_gene_variant HET FN3206-S Chr9 19095800 19095800 0 0 Insertion 22 downstream_gene_variant HET FN3206-S Chr9 22622635 22622819 0 0 Inversion 184 LOC_Os09g39334 expressed protein FN3206-S Chr9 8889993 8890036 0 0 Deletion 43 FRAME_SHIFT HOMO LOC_Os09g14890 expressed protein