FN3207-S Chr1 23325612 23325618 0 0 Deletion 6 INTERGENIC HOMO FN3207-S Chr1 25180737 25180738 0 0 Deletion 1 downstream_gene_variant HET FN3207-S Chr1 32550727 32550729 0 0 Deletion 2 upstream_gene_variant HET FN3207-S Chr1 34228015 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr1 34784534 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr1 36086408 36086408 0 0 Insertion 2 upstream_gene_variant HET FN3207-S Chr1 36269209 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g62630 aspartic proteinase nepenthesin precursor, putative, expressed FN3207-S Chr10 1684807 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr10 205789 205790 0 0 Deletion 1 upstream_gene_variant HET FN3207-S Chr10 22316052 T-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3207-S Chr10 22316053 T-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3207-S Chr10 8252843 8252844 0 0 Deletion 1 upstream_gene_variant HET FN3207-S Chr11 1098828 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr11 12976840 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3207-S Chr11 17523295 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr11 20951419 20951419 0 0 Insertion 4 INTRON HOMO FN3207-S Chr11 25472806 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr11 5168027 5168032 0 0 Deletion 5 upstream_gene_variant HET FN3207-S Chr12 14110508 A-G 0 0 Single Base Substitution 0 INTRON HET FN3207-S Chr12 15107656 15107656 0 0 Insertion 2 upstream_gene_variant HET FN3207-S Chr12 22805955 22805955 0 0 Insertion 4 upstream_gene_variant HET FN3207-S Chr12 25200375 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3207-S Chr12 26861369 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g43270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3207-S Chr2 12148991 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr2 24022549 24022557 0 0 Deletion 8 downstream_gene_variant HET FN3207-S Chr2 31314896 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr2 34034774 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3207-S Chr2 9309529 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr3 10114971 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr3 19346571 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr3 20420171 20420177 0 0 Deletion 6 INTERGENIC HET FN3207-S Chr3 24902865 C-T 0 0 Single Base Substitution 0 START_GAINED HET FN3207-S Chr3 30077943 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3207-S Chr3 30077944 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3207-S Chr3 30393897 30393907 0 0 Deletion 10 upstream_gene_variant HET FN3207-S Chr3 35949458 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr4 10466815 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr4 1227908 1227908 0 0 Insertion 13 upstream_gene_variant HET FN3207-S Chr4 12348689 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr4 16783882 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr4 21476562 21476562 0 0 Insertion 6 upstream_gene_variant HET FN3207-S Chr4 26164892 26164892 0 0 Insertion 2 upstream_gene_variant HET FN3207-S Chr4 32476086 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr4 8450466 8450467 0 0 Deletion 1 upstream_gene_variant HET FN3207-S Chr5 10922526 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr5 16940096 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g28900 retrotransposon protein, putative, unclassified, expressed FN3207-S Chr5 17821301 17821307 0 0 Deletion 6 INTERGENIC HET FN3207-S Chr5 9252992 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr6 12924455 12924457 0 0 Deletion 2 INTERGENIC HET FN3207-S Chr6 1967429 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr6 20350373 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g35000 retrotransposon, putative, centromere-specific, expressed FN3207-S Chr6 63054 63056 0 0 Deletion 2 intergenic_region HET FN3207-S Chr6 8170443 8170443 0 0 Insertion 18 intergenic_region HET FN3207-S Chr7 14868530 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3207-S Chr7 22628533 A-C 0 0 Single Base Substitution 0 INTRON HET FN3207-S Chr7 2371114 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr7 24422705 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr7 27956123 27956123 0 0 Insertion 1 upstream_gene_variant HET FN3207-S Chr7 3645708 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3207-S Chr7 8639281 9492251 0 0 Inversion 852970 LOC_Os07g15080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3207-S Chr7 9190944 9492250 0 0 Inversion 301306 FN3207-S Chr8 21087357 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr8 26847326 26847326 0 0 Insertion 2 INTERGENIC HET FN3207-S Chr8 27584050 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3207-S Chr8 4906154 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr8 5977032 5977032 0 0 Insertion 73 upstream_gene_variant HET FN3207-S Chr8 9143647 Chr7 6241005 0 Translocation 0 FN3207-S Chr8 9624427 Chr7 8806238 0 Translocation 0 LOC_Os08g15830 retrotransposon protein, putative, unclassified, expressed FN3207-S Chr9 10923210 10923212 0 0 Deletion 2 INTRON HOMO FN3207-S Chr9 12331329 12331330 0 0 Deletion 1 intergenic_region HET FN3207-S Chr9 14036018 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3207-S Chr9 1457697 T-A 0 0 Single Base Substitution 0 INTRON HET FN3207-S Chr9 22474989 22474989 0 0 Insertion 57 intron_variant HET FN3207-S Chr9 2821797 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3207-S Chr9 3505049 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3207-S Chr9 7096177 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g12410 hAT dimerisation domain-containing protein, putative, expressed FN3207-S Chr9 8300892 G-A 0 0 Single Base Substitution 0 INTERGENIC HET