FN3208-S Chr1 10942406 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr1 13122992 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr1 13558363 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr1 17257822 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g31550 retrotransposon protein, putative, Ty1-copia subclass FN3208-S Chr1 17399535 17399542 0 0 Deletion 7 SPLICE_SITE_REGION HOMO FN3208-S Chr1 18220282 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr1 19646812 19646816 0 0 Deletion 4 intron_variant HET FN3208-S Chr1 20818908 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3208-S Chr1 24780230 24780230 0 0 Insertion 33 downstream_gene_variant HET FN3208-S Chr1 29350101 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g51090 retrotransposon protein, putative, unclassified, expressed FN3208-S Chr1 34994844 34994846 0 0 Deletion 2 INTERGENIC HET FN3208-S Chr10 11870358 11870363 0 0 Deletion 5 INTERGENIC HET FN3208-S Chr10 12430114 Chr7 13469497 0 Translocation 0 FN3208-S Chr10 1520524 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr10 19821734 19821734 0 0 Insertion 1 upstream_gene_variant HET FN3208-S Chr10 3179299 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3208-S Chr10 600656 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g01950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3208-S Chr10 7595574 7595574 0 0 Insertion 16 3_prime_UTR_variant HET FN3208-S Chr11 13141387 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g22850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3208-S Chr11 19250185 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr11 5258987 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3208-S Chr11 6172252 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr12 12333626 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr12 13711447 13711447 0 0 Insertion 1 upstream_gene_variant HET FN3208-S Chr12 15802233 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3208-S Chr12 19933449 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr12 20096544 Chr6 23395012 0 Translocation 0 FN3208-S Chr12 21709091 21709091 0 0 Insertion 1 downstream_gene_variant HET FN3208-S Chr12 21982395 21982395 0 0 Insertion 1 upstream_gene_variant HET FN3208-S Chr12 2876391 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr12 7588485 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr2 16955895 16955895 0 0 Insertion 75 upstream_gene_variant HET FN3208-S Chr2 22132402 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr2 25365968 25365970 0 0 Deletion 2 upstream_gene_variant HET FN3208-S Chr2 35559918 35559918 0 0 Insertion 3 INTRON HET FN3208-S Chr2 3884600 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr3 10905018 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr3 29317257 A-G 0 0 Single Base Substitution 0 INTRON HET FN3208-S Chr3 8096289 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr4 15264988 15264988 0 0 Insertion 2 upstream_gene_variant HET FN3208-S Chr4 17674103 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr4 20605014 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr4 21110179 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr4 23855897 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr4 24031644 24031645 0 0 Deletion 1 INTERGENIC HOMO FN3208-S Chr4 3405243 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3208-S Chr4 34566084 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr4 8605260 8605294 0 0 Deletion 34 upstream_gene_variant HET FN3208-S Chr4 9076573 C-T 0 0 Single Base Substitution 0 INTRON HET FN3208-S Chr5 20224497 20224506 0 0 Deletion 9 INTERGENIC HOMO FN3208-S Chr5 21252012 21252014 0 0 Deletion 2 INTERGENIC HET FN3208-S Chr5 2689821 2689821 0 0 Insertion 1 upstream_gene_variant HET FN3208-S Chr5 27063853 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr5 27955614 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr5 9452182 T-A 0 0 Single Base Substitution 0 INTRON HET FN3208-S Chr6 1289119 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g03380 expressed protein FN3208-S Chr6 13234703 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3208-S Chr6 21695000 21695001 0 0 Deletion 1 upstream_gene_variant HET FN3208-S Chr6 30007781 30007785 0 0 Deletion 4 downstream_gene_variant HET FN3208-S Chr6 5443144 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr7 12610777 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3208-S Chr7 18991864 18991864 0 0 Insertion 2 downstream_gene_variant HET FN3208-S Chr7 25296444 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr7 26318198 Chr5 17700435 0 Translocation 0 FN3208-S Chr7 28085240 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr7 5461268 Chr2 683819 0 Translocation 0 FN3208-S Chr7 668009 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN3208-S Chr7 760407 760414 0 0 Deletion 7 INTRON HOMO FN3208-S Chr7 7844806 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr7 8973907 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3208-S Chr8 1332141 1332141 0 0 Insertion 1 intron_variant HET FN3208-S Chr8 19396490 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g31370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3208-S Chr8 19396491 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g31370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3208-S Chr8 19481847 19481848 0 0 Deletion 1 INTERGENIC HET FN3208-S Chr8 26672356 26672357 0 0 Deletion 1 upstream_gene_variant HET FN3208-S Chr8 5933067 5933068 0 0 Deletion 1 upstream_gene_variant HET FN3208-S Chr8 5946294 G-T 0 0 Single Base Substitution 0 INTRON HET FN3208-S Chr8 7962236 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3208-S Chr9 12237209 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3208-S Chr9 20665793 20665798 0 0 Deletion 5 INTERGENIC HET FN3208-S Chr9 21442564 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g37170 retrotransposon protein, putative, unclassified, expressed