FN3209-S Chr1 14203366 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr1 22336620 22336622 0 0 Deletion 2 INTERGENIC HET FN3209-S Chr1 2981348 2981541 0 0 Inversion 193 FN3209-S Chr1 30888588 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr1 33343499 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr1 37055444 37055445 0 0 Deletion 1 intergenic_region HET FN3209-S Chr1 39242048 T-A 0 0 Single Base Substitution 0 INTRON HET FN3209-S Chr1 8318510 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr1 955522 955523 0 0 Deletion 1 INTRON HOMO FN3209-S Chr10 1220827 1220828 0 0 Deletion 1 frameshift_variant HET LOC_Os10g02960 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3209-S Chr10 13081720 T-C 0 0 Single Base Substitution 0 INTRON HET FN3209-S Chr10 17352060 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr10 22440219 22440221 0 0 Deletion 2 upstream_gene_variant HET FN3209-S Chr10 3316093 3316094 0 0 Deletion 1 upstream_gene_variant HET FN3209-S Chr11 20126934 Chr3 8265184 0 Translocation 0 FN3209-S Chr11 21253718 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g36150 receptor-like protein kinase 2 precursor, putative, expressed FN3209-S Chr11 23388900 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr11 26664039 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr11 28607685 28607686 0 0 Deletion 1 downstream_gene_variant HET FN3209-S Chr11 3393664 Chr10 2180845 0 Translocation 0 FN3209-S Chr11 3396667 Chr10 2180416 0 Translocation 0 FN3209-S Chr11 3443825 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr11 3742903 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g07440 plant neutral invertase domain containing protein, expressed FN3209-S Chr11 3742904 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g07440 plant neutral invertase domain containing protein, expressed FN3209-S Chr12 10300674 10300676 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os12g17920 hypothetical protein FN3209-S Chr12 10637349 10637355 0 0 Deletion 6 INTERGENIC HOMO FN3209-S Chr12 17189074 17189074 0 0 Insertion 1 downstream_gene_variant HET FN3209-S Chr12 19830433 19830439 0 0 Deletion 6 INTRON HOMO FN3209-S Chr12 8223313 8223313 0 0 Insertion 1 downstream_gene_variant HET FN3209-S Chr2 14508501 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3209-S Chr2 17309227 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g29190 ankyrin, putative, expressed FN3209-S Chr2 21556760 21556761 0 0 Deletion 1 upstream_gene_variant HET FN3209-S Chr2 22403251 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr2 24875560 24875565 0 0 Deletion 5 upstream_gene_variant HET FN3209-S Chr2 25105827 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr2 25105828 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr2 26739986 26739987 0 0 Deletion 1 upstream_gene_variant HET FN3209-S Chr2 30173658 30173659 0 0 Deletion 1 downstream_gene_variant HET FN3209-S Chr2 32247039 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr2 5959730 5959741 0 0 Deletion 11 INTERGENIC HOMO FN3209-S Chr2 7948498 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr2 7950255 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr3 15470672 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g27019 expressed protein FN3209-S Chr3 20535714 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr3 22571693 22571694 0 0 Deletion 1 INTERGENIC HET FN3209-S Chr3 25880704 25880707 0 0 Deletion 3 INTERGENIC HET FN3209-S Chr3 29657198 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr3 32660776 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3209-S Chr4 15347574 15347576 0 0 Deletion 2 upstream_gene_variant HET FN3209-S Chr4 17325995 17325996 0 0 Deletion 1 downstream_gene_variant HET FN3209-S Chr4 2417605 2417611 0 0 Deletion 6 CODON_DELETION HOMO LOC_Os04g04990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3209-S Chr4 27097238 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr5 15437544 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g26570 retrotransposon protein, putative, unclassified, expressed FN3209-S Chr5 16258701 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g27870 expressed protein FN3209-S Chr5 29331283 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr5 29331284 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr5 664252 664252 0 0 Insertion 6 upstream_gene_variant HET FN3209-S Chr6 11327716 T-C 0 0 Single Base Substitution 0 INTRON HET FN3209-S Chr6 12800346 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3209-S Chr6 13546816 Chr4 3152700 0 Translocation 0 FN3209-S Chr6 15582735 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr6 15855815 16262307 0 0 Inversion 406492 FN3209-S Chr6 15855818 16262307 0 0 Inversion 406489 FN3209-S Chr6 16051742 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr6 1734219 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g04150 magnesium-protoporphyrin O-methyltransferase, putative, expressed FN3209-S Chr6 27164760 27164762 0 0 Deletion 2 INTERGENIC HET FN3209-S Chr6 30869443 30869444 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os06g51010 expressed protein FN3209-S Chr6 3665743 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr6 7088330 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3209-S Chr6 9566688 9566688 0 0 Insertion 2 intron_variant HET FN3209-S Chr7 10290187 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr7 10509638 G-A 0 0 Single Base Substitution 0 INTRON HET FN3209-S Chr7 25225523 25225523 0 0 Insertion 44 upstream_gene_variant HET FN3209-S Chr7 29362742 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr7 361688 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr7 6975773 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr7 8630645 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3209-S Chr8 15328001 15348000 0 0 Deletion 19999 LOC_Os08g25230 expressed protein FN3209-S Chr8 15328001 15348000 0 0 Deletion 19999 LOC_Os08g25240 MBTB25 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3209-S Chr8 15328001 15348000 0 0 Deletion 19999 LOC_Os08g25250 retrotransposon protein, putative, unclassified, expressed FN3209-S Chr8 15328001 15348000 0 0 Deletion 19999 LOC_Os08g25260 transposon protein, putative, unclassified, expressed FN3209-S Chr8 15328001 15348000 0 0 Deletion 19999 LOC_Os08g25839 expressed protein FN3209-S Chr8 15820563 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3209-S Chr8 20615596 20615600 0 0 Deletion 4 INTERGENIC HET FN3209-S Chr8 507441 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3209-S Chr8 507442 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3209-S Chr8 512084 589700 0 0 Inversion 77616 FN3209-S Chr8 512098 589707 0 0 Inversion 77609 FN3209-S Chr8 7266618 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g12330 retrotransposon protein, putative, unclassified FN3209-S Chr8 9498458 Chr7 25287873 0 Translocation 0 FN3209-S Chr9 11181777 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3209-S Chr9 11927238 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3209-S Chr9 15253617 15253620 0 0 Deletion 3 INTRON HOMO FN3209-S Chr9 17733054 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET