FN3211-S Chr1 11184213 11184217 0 0 Deletion 4 frameshift_variant HET LOC_Os01g19720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3211-S Chr1 12032286 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr1 13378877 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr1 1814490 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr1 19537963 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3211-S Chr1 29542577 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr1 34919998 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr1 38090641 38090642 0 0 Deletion 1 intron_variant HET FN3211-S Chr1 7545707 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr1 9208525 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3211-S Chr10 19136053 19136054 0 0 Deletion 1 INTRON HOMO FN3211-S Chr10 21226056 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g39710 strictosidine synthase, putative, expressed FN3211-S Chr10 22899129 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g42470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3211-S Chr10 3230086 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3211-S Chr10 5085353 C-T 0 0 Single Base Substitution 0 INTRON HET FN3211-S Chr10 9013664 9013665 0 0 Deletion 1 upstream_gene_variant HET FN3211-S Chr11 1221348 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr11 17317441 17317441 0 0 Insertion 8 upstream_gene_variant HET FN3211-S Chr11 18909432 18909434 0 0 Deletion 2 INTERGENIC HOMO FN3211-S Chr11 26299305 26299306 0 0 Deletion 1 INTERGENIC HET FN3211-S Chr11 3150608 C-T 0 0 Single Base Substitution 0 INTRON HET FN3211-S Chr12 12303348 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr12 20787002 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3211-S Chr12 20788653 21122323 0 0 Inversion 333670 FN3211-S Chr12 20788665 21122332 0 0 Inversion 333667 FN3211-S Chr12 20839151 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3211-S Chr12 21080041 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3211-S Chr12 21120915 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3211-S Chr12 21120923 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3211-S Chr12 24855745 24855746 0 0 Deletion 1 INTERGENIC HOMO FN3211-S Chr12 26475409 26475410 0 0 Deletion 1 INTERGENIC HET FN3211-S Chr12 343635 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3211-S Chr12 3603510 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN3211-S Chr12 5029953 5029983 0 0 Deletion 30 INTERGENIC HOMO FN3211-S Chr12 8437178 8437180 0 0 Deletion 2 INTERGENIC HOMO FN3211-S Chr12 9917951 Chr4 6963432 0 Translocation 0 FN3211-S Chr2 10176695 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr2 10827294 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr2 12690831 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr2 20395414 20395416 0 0 Deletion 2 INTERGENIC HOMO FN3211-S Chr2 22091028 22091029 0 0 Deletion 1 INTRON HOMO FN3211-S Chr2 23513813 G-A 0 0 Single Base Substitution 0 INTRON HET FN3211-S Chr2 29470724 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr2 4140992 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr2 6579241 T-C 0 0 Single Base Substitution 0 INTRON HET FN3211-S Chr2 7716508 7716508 0 0 Insertion 1 INTERGENIC HET FN3211-S Chr2 7832011 7832129 0 0 Deletion 118 intergenic_region HET FN3211-S Chr3 1118016 1118018 0 0 Deletion 2 INTERGENIC HET FN3211-S Chr3 12760317 12760317 0 0 Insertion 2 upstream_gene_variant HET FN3211-S Chr3 17431215 17431216 0 0 Deletion 1 upstream_gene_variant HET FN3211-S Chr3 2087842 2087845 0 0 Deletion 3 INTERGENIC HOMO FN3211-S Chr3 28501288 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3211-S Chr3 7331711 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3211-S Chr3 8881988 8881988 0 0 Insertion 1 INTERGENIC HET FN3211-S Chr4 20056184 20056184 0 0 Insertion 1 upstream_gene_variant HET FN3211-S Chr4 21705714 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr4 26231761 26231763 0 0 Deletion 2 INTERGENIC HET FN3211-S Chr4 27641403 27641618 0 0 Inversion 215 LOC_Os04g46620 T-complex protein, putative, expressed FN3211-S Chr4 28976013 28976015 0 0 Deletion 2 INTERGENIC HET FN3211-S Chr4 3036608 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3211-S Chr4 35206730 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr4 690433 690433 0 0 Insertion 26 upstream_gene_variant HET FN3211-S Chr4 7909466 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr4 7962905 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3211-S Chr5 10194262 10194273 0 0 Deletion 11 INTERGENIC HOMO FN3211-S Chr5 14281927 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3211-S Chr5 17609575 17609577 0 0 Deletion 2 upstream_gene_variant HET FN3211-S Chr5 19288487 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3211-S Chr5 20318970 20318975 0 0 Deletion 5 INTRON HOMO FN3211-S Chr5 26651070 26651070 0 0 Insertion 2 INTERGENIC HET FN3211-S Chr5 4156021 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3211-S Chr5 5679153 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr6 11475343 11475349 0 0 Deletion 6 INTERGENIC HOMO FN3211-S Chr6 26763371 26763375 0 0 Deletion 4 INTERGENIC HET FN3211-S Chr6 27972297 27972311 0 0 Deletion 14 downstream_gene_variant HET FN3211-S Chr6 8462 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr6 8600695 8600762 0 0 Deletion 67 upstream_gene_variant HET FN3211-S Chr8 15395839 15395841 0 0 Deletion 2 INTRON HET FN3211-S Chr8 2102491 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr8 21257930 21500741 0 0 Inversion 242811 LOC_Os08g33950 retrotransposon protein, putative, unclassified, expressed FN3211-S Chr8 21257946 21470779 0 0 Inversion 212833 LOC_Os08g33950 retrotransposon protein, putative, unclassified, expressed FN3211-S Chr8 26877346 26877346 0 0 Insertion 2 INTRON HET FN3211-S Chr8 27625588 27625590 0 0 Deletion 2 INTERGENIC HET FN3211-S Chr8 5008414 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3211-S Chr8 5612175 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3211-S Chr9 13141541 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3211-S Chr9 4107808 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3211-S Chr9 4286915 4286919 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os09g08290 retrotransposon, putative, centromere-specific, expressed FN3211-S Chr9 9573937 Chr1 6540105 0 Translocation 0