FN3212-S Chr1 11165094 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3212-S Chr1 16890676 16890676 0 0 Insertion 1 downstream_gene_variant HET FN3212-S Chr1 18472411 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g33560 retrotransposon protein, putative, unclassified, expressed FN3212-S Chr1 21209598 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g37880 transposon protein, putative, unclassified, expressed FN3212-S Chr1 338243 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g01689 phosphatidylinositol 3- and 4-kinase family protein, expressed FN3212-S Chr1 34925376 34925379 0 0 Deletion 3 inframe_deletion HET LOC_Os01g60380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3212-S Chr1 38571602 38571620 0 0 Deletion 18 INTERGENIC HET FN3212-S Chr1 41640734 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr1 4540825 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr10 15633338 15633340 0 0 Deletion 2 INTRON HOMO FN3212-S Chr10 16514062 16514068 0 0 Deletion 6 INTERGENIC HET FN3212-S Chr10 17338261 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr10 186169 186169 0 0 Insertion 2 upstream_gene_variant HET FN3212-S Chr10 21683380 Chr5 26889343 0 Translocation 0 LOC_Os05g46390 OsFBX175 - F-box domain containing protein, expressed FN3212-S Chr10 21683405 Chr5 26849359 0 Translocation 0 FN3212-S Chr10 2770857 2770857 0 0 Insertion 1 upstream_gene_variant HET FN3212-S Chr10 3053177 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr10 461059 461061 0 0 Deletion 2 INTERGENIC HET FN3212-S Chr10 7338360 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3212-S Chr10 8231803 8231803 0 0 Insertion 1 upstream_gene_variant HET FN3212-S Chr11 12647428 12647429 0 0 Deletion 1 upstream_gene_variant HET FN3212-S Chr11 17106903 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr11 19795127 19795130 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os11g33454 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3212-S Chr11 19842339 Chr3 29848934 0 Translocation 0 FN3212-S Chr11 8116795 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3212-S Chr11 9785812 9785824 0 0 Deletion 12 INTERGENIC HOMO FN3212-S Chr12 10723105 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr12 13733859 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr12 15679839 15679839 0 0 Insertion 1 upstream_gene_variant HET FN3212-S Chr12 16866528 16866528 0 0 Insertion 4 upstream_gene_variant HET FN3212-S Chr12 1867356 Chr2 16127259 0 Translocation 0 FN3212-S Chr12 24971710 24971710 0 0 Insertion 1 upstream_gene_variant HET FN3212-S Chr2 18782842 18782879 0 0 Deletion 37 upstream_gene_variant HET FN3212-S Chr2 23336959 23336959 0 0 Insertion 1 upstream_gene_variant HET FN3212-S Chr2 2463858 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g05150 retrotransposon protein, putative, unclassified, expressed FN3212-S Chr2 31336745 31336780 0 0 Deletion 35 upstream_gene_variant HET FN3212-S Chr2 31846649 31846664 0 0 Deletion 15 disruptive_inframe_deletion HET LOC_Os02g52020 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3212-S Chr2 32425218 32425219 0 0 Deletion 1 INTERGENIC HET FN3212-S Chr2 34541001 34541002 0 0 Deletion 1 upstream_gene_variant HET FN3212-S Chr2 465177 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr3 13507809 13558994 0 0 Inversion 51185 FN3212-S Chr3 16189539 A-C 0 0 Single Base Substitution 0 INTRON HET FN3212-S Chr3 16887670 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr3 21360570 21360570 0 0 Insertion 26 upstream_gene_variant HET FN3212-S Chr3 22865538 22865539 0 0 Deletion 1 INTERGENIC HET FN3212-S Chr3 23033924 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3212-S Chr3 23270994 23270996 0 0 Deletion 2 INTERGENIC HOMO FN3212-S Chr3 26387211 26387224 0 0 Deletion 13 upstream_gene_variant HET FN3212-S Chr4 12059341 12059342 0 0 Deletion 1 INTERGENIC HOMO FN3212-S Chr4 22390494 A-T 0 0 Single Base Substitution 0 INTRON HET FN3212-S Chr4 26533653 A-C 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3212-S Chr4 6396701 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr5 10309490 C-T 0 0 Single Base Substitution 0 INTRON HET FN3212-S Chr5 12150645 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr5 20399563 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3212-S Chr5 2417863 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os05g04990 adenosylmethionine decarboxylase, putative, expressed FN3212-S Chr5 2698006 2698008 0 0 Deletion 2 upstream_gene_variant HET FN3212-S Chr5 9878616 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3212-S Chr6 13357467 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr6 24421377 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3212-S Chr6 25764375 25764376 0 0 Deletion 1 INTERGENIC HOMO FN3212-S Chr6 27298457 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3212-S Chr6 27298458 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3212-S Chr6 8619321 8619321 0 0 Insertion 30 frameshift_variant HET LOC_Os06g15210 expressed protein FN3212-S Chr7 13616580 13616581 0 0 Deletion 1 upstream_gene_variant HET FN3212-S Chr7 28994733 Chr4 21354356 0 Translocation 0 LOC_Os07g48460 stress responsive protein, putative, expressed FN3212-S Chr7 4121150 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g08120 BTBT2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed FN3212-S Chr7 6846435 Chr1 27664994 0 Translocation 0 FN3212-S Chr8 15633999 Chr4 3615666 0 Translocation 0 FN3212-S Chr8 16090852 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3212-S Chr8 17400550 17400555 0 0 Deletion 5 INTRON HOMO FN3212-S Chr8 23639259 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr8 24339629 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3212-S Chr8 6514991 6514991 0 0 Insertion 1 upstream_gene_variant HET FN3212-S Chr8 7530426 7530426 0 0 Insertion 1 downstream_gene_variant HET FN3212-S Chr9 12443981 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3212-S Chr9 20433560 20433561 0 0 Deletion 1 downstream_gene_variant HET FN3212-S Chr9 5979547 Chr2 18788610 0 Translocation 0