FN3214-S Chr1 16511097 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr1 16895894 16895894 0 0 Insertion 1 intergenic_region HET FN3214-S Chr1 21103425 21103425 0 0 Insertion 8 intergenic_region HET FN3214-S Chr1 2650176 2650342 0 0 Deletion 166 upstream_gene_variant HET FN3214-S Chr1 27463040 27463041 0 0 Deletion 1 upstream_gene_variant HET FN3214-S Chr1 28807960 28807969 0 0 Deletion 9 upstream_gene_variant HET FN3214-S Chr1 34345889 34345891 0 0 Deletion 2 upstream_gene_variant HET FN3214-S Chr1 36615159 36615161 0 0 Deletion 2 INTERGENIC HOMO FN3214-S Chr1 42385063 42385065 0 0 Deletion 2 INTERGENIC HOMO FN3214-S Chr10 12388291 Chr1 18490297 0 Translocation 0 FN3214-S Chr10 12427593 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3214-S Chr10 12528896 12528896 0 0 Insertion 1 upstream_gene_variant HET FN3214-S Chr10 19335773 19335773 0 0 Insertion 2 INTERGENIC HET FN3214-S Chr10 21020806 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr10 2610998 Chr1 16147165 0 Translocation 0 FN3214-S Chr10 6984004 6984004 0 0 Insertion 1 upstream_gene_variant HET FN3214-S Chr11 12150216 12150247 0 0 Deletion 31 intergenic_region HET FN3214-S Chr11 21692241 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3214-S Chr11 27074008 27074008 0 0 Insertion 1 upstream_gene_variant HET FN3214-S Chr11 27311127 Chr1 20757377 0 Translocation 0 FN3214-S Chr11 27794146 Chr5 23586766 0 Translocation 0 LOC_Os11g45930 NBS-LRR type disease resistance protein, putative, expressed FN3214-S Chr11 5447910 5447911 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os11g10090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3214-S Chr11 7536128 Chr6 4131691 0 Translocation 0 FN3214-S Chr12 1414535 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3214-S Chr12 17823013 17823014 0 0 Deletion 1 upstream_gene_variant HET FN3214-S Chr12 3898622 3898624 0 0 Deletion 2 downstream_gene_variant HET FN3214-S Chr12 9672312 9672312 0 0 Insertion 2 downstream_gene_variant HET FN3214-S Chr2 1028752 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr2 12921373 Chr1 33032305 0 Translocation 0 FN3214-S Chr2 13691593 13691593 0 0 Insertion 1 intergenic_region HET FN3214-S Chr2 2054745 A-G 0 0 Single Base Substitution 0 INTRON HET FN3214-S Chr2 27088884 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3214-S Chr2 3945946 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr2 4815705 4815705 0 0 Insertion 1 upstream_gene_variant HET FN3214-S Chr2 9133922 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3214-S Chr3 13345642 T-A 0 0 Single Base Substitution 0 INTRON HET FN3214-S Chr3 13515384 13515384 0 0 Insertion 1 downstream_gene_variant HET FN3214-S Chr3 13816384 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3214-S Chr3 17021421 A-G 0 0 Single Base Substitution 0 INTRON HET FN3214-S Chr3 18622778 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr3 22906322 22906342 0 0 Deletion 20 downstream_gene_variant HET FN3214-S Chr3 23333074 23333074 0 0 Insertion 1 upstream_gene_variant HET FN3214-S Chr3 29339449 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3214-S Chr3 33522470 33522486 0 0 Deletion 16 INTERGENIC HOMO FN3214-S Chr3 3480573 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN3214-S Chr3 35243884 Chr1 35138887 0 Translocation 0 LOC_Os03g62220 expressed protein FN3214-S Chr4 10818290 10818291 0 0 Deletion 1 downstream_gene_variant HET FN3214-S Chr4 13754369 13754370 0 0 Deletion 1 upstream_gene_variant HET FN3214-S Chr4 14111089 14111090 0 0 Deletion 1 intergenic_region HET FN3214-S Chr4 15166736 15166738 0 0 Deletion 2 upstream_gene_variant HET FN3214-S Chr4 20213225 Chr1 11799477 0 Translocation 0 LOC_Os04g33370 cytochrome P450, putative, expressed FN3214-S Chr4 3210039 3210063 0 0 Deletion 24 upstream_gene_variant HET FN3214-S Chr4 33370205 33370212 0 0 Deletion 7 downstream_gene_variant HET FN3214-S Chr4 5590542 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3214-S Chr4 9880631 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr5 20106525 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3214-S Chr5 20106528 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3214-S Chr5 23041563 23041572 0 0 Deletion 9 INTERGENIC HOMO FN3214-S Chr5 29117705 29117705 0 0 Insertion 4 INTERGENIC HET FN3214-S Chr5 29181221 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g50880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3214-S Chr5 29647884 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr5 3627603 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g06920 relA-SpoT like protein RSH4, putative, expressed FN3214-S Chr5 7476907 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g13480 S-adenosylmethionine decarboxylase proenzyme, putative, expressed FN3214-S Chr6 10337836 10337837 0 0 Deletion 1 upstream_gene_variant HET FN3214-S Chr6 13229449 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g22740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3214-S Chr6 13575171 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3214-S Chr6 14224981 14226227 0 0 Inversion 1246 LOC_Os06g24310 retrotransposon protein, putative, unclassified, expressed FN3214-S Chr6 14224996 14226230 0 0 Inversion 1234 LOC_Os06g24310 retrotransposon protein, putative, unclassified, expressed FN3214-S Chr6 15501698 Chr1 16931496 0 Translocation 0 FN3214-S Chr6 16039524 16039533 0 0 Deletion 9 disruptive_inframe_deletion HET LOC_Os06g28230 hypothetical protein FN3214-S Chr6 16044596 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3214-S Chr6 16073303 Chr5 1070147 0 Translocation 0 FN3214-S Chr6 22855099 22855100 0 0 Deletion 1 downstream_gene_variant HET FN3214-S Chr6 26238325 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3214-S Chr6 26711992 26711993 0 0 Deletion 1 upstream_gene_variant HET FN3214-S Chr6 9741689 9741689 0 0 Insertion 1 upstream_gene_variant HET FN3214-S Chr7 21549231 21549233 0 0 Deletion 2 downstream_gene_variant HET FN3214-S Chr7 23011906 Chr4 31785700 0 Translocation 0 FN3214-S Chr7 23466292 23466293 0 0 Deletion 1 intron_variant HET FN3214-S Chr7 6535711 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr7 7012063 7012064 0 0 Deletion 1 downstream_gene_variant HET FN3214-S Chr7 7853027 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g13680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3214-S Chr8 12050349 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr8 12158178 12158179 0 0 Deletion 1 upstream_gene_variant HET FN3214-S Chr8 17554699 17554700 0 0 Deletion 1 INTERGENIC HET FN3214-S Chr8 2861195 2861197 0 0 Deletion 2 downstream_gene_variant HET FN3214-S Chr8 3319887 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr8 4703392 5070577 0 0 Inversion 367185 LOC_Os08g08220 EDA16, putative, expressed FN3214-S Chr8 4703395 5070580 0 0 Inversion 367185 LOC_Os08g08220 EDA16, putative, expressed FN3214-S Chr8 5415383 5415435 0 0 Deletion 52 upstream_gene_variant HET FN3214-S Chr8 9071655 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3214-S Chr8 9090038 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr8 9611570 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3214-S Chr9 14181446 14181446 0 0 Insertion 1 upstream_gene_variant HET FN3214-S Chr9 5706651 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3214-S Chr9 8487771 Chr6 18348286 0 Translocation 0 LOC_Os06g31550 retrotransposon protein, putative, unclassified FN3214-S Chr9 94325 94325 0 0 Insertion 1 downstream_gene_variant HET