FN3215-S Chr1 27642831 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr1 36896666 36896672 0 0 Deletion 6 UTR_3_PRIME HET FN3215-S Chr1 5418663 5418664 0 0 Deletion 1 UTR_3_PRIME HOMO FN3215-S Chr10 10201071 10201071 0 0 Insertion 1 upstream_gene_variant HET FN3215-S Chr10 11760185 Chr2 4884740 0 Translocation 0 FN3215-S Chr10 1505819 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr10 16527697 16527702 0 0 Deletion 5 INTERGENIC HOMO FN3215-S Chr10 17599740 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3215-S Chr10 19448366 19448366 0 0 Insertion 1 upstream_gene_variant HET FN3215-S Chr10 21864210 21864210 0 0 Insertion 2 INTRON HOMO FN3215-S Chr10 7047389 Chr1 36582410 0 Translocation 0 FN3215-S Chr11 13208459 13208462 0 0 Deletion 3 INTERGENIC HET FN3215-S Chr11 16953722 16953762 0 0 Deletion 40 5_prime_UTR_variant HET FN3215-S Chr11 17194290 17194292 0 0 Deletion 2 INTERGENIC HET FN3215-S Chr11 17664140 17664141 0 0 Deletion 1 frameshift_variant HET LOC_Os11g30390 transposon protein, putative, unclassified, expressed FN3215-S Chr11 20120942 C-G 0 0 Single Base Substitution 0 INTRON HET FN3215-S Chr11 20629447 Chr8 14819674 0 Translocation 0 FN3215-S Chr11 24572965 Chr5 19540894 0 Translocation 0 FN3215-S Chr11 24937868 G-A 0 0 Single Base Substitution 0 INTRON HET FN3215-S Chr11 25978065 T-G 0 0 Single Base Substitution 0 INTRON HET FN3215-S Chr11 8238788 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3215-S Chr12 10412683 10412688 0 0 Deletion 5 INTERGENIC HET FN3215-S Chr12 1087019 Chr5 19541024 0 Translocation 0 FN3215-S Chr12 1125437 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g03010 retrotransposon protein, putative, unclassified, expressed FN3215-S Chr12 13916899 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr12 16959286 Chr8 6751598 0 Translocation 0 FN3215-S Chr12 2269355 2269364 0 0 Deletion 9 downstream_gene_variant HET FN3215-S Chr12 22798936 22798936 0 0 Insertion 30 upstream_gene_variant HET FN3215-S Chr2 16276460 16276461 0 0 Deletion 1 upstream_gene_variant HET FN3215-S Chr2 17919273 17919273 0 0 Insertion 1 downstream_gene_variant HET FN3215-S Chr2 20773306 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr2 23424803 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr2 24186189 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr2 27893181 G-A 0 0 Single Base Substitution 0 INTRON HET FN3215-S Chr2 9009054 9009054 0 0 Insertion 9 upstream_gene_variant HET FN3215-S Chr3 179069 179069 0 0 Insertion 16 upstream_gene_variant HET FN3215-S Chr3 18006316 18006318 0 0 Deletion 2 FRAME_SHIFT HOMO LOC_Os03g31560 retrotransposon protein, putative, unclassified, expressed FN3215-S Chr3 23141900 23141900 0 0 Insertion 6 upstream_gene_variant HET FN3215-S Chr3 31555748 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3215-S Chr3 3663208 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr3 9557729 Chr2 35079536 0 Translocation 0 LOC_Os03g17180 ABC transporter, ATP-binding protein, putative, expressed FN3215-S Chr3 9560198 Chr2 35079544 0 Translocation 0 FN3215-S Chr4 14911497 14911497 0 0 Insertion 64 upstream_gene_variant HET FN3215-S Chr4 19596923 Chr2 8070000 0 Translocation 0 FN3215-S Chr4 19757052 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr4 20982540 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr4 32282428 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr4 555489 555795 0 0 Deletion 306 upstream_gene_variant HET FN3215-S Chr5 13129013 13129017 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os05g23020 retrotransposon protein, putative, Ty3-gypsy subclass FN3215-S Chr5 17137151 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3215-S Chr5 25870740 25870741 0 0 Deletion 1 upstream_gene_variant HET FN3215-S Chr5 292502 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3215-S Chr6 10116894 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3215-S Chr6 12222124 12222125 0 0 Deletion 1 upstream_gene_variant HET FN3215-S Chr6 14513289 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr6 16668108 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr6 17084368 17084419 0 0 Deletion 51 frameshift_variant&splice_acceptor_variant&splice_region_variant&intron_variant HET LOC_Os06g29750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3215-S Chr6 25639660 25639661 0 0 Deletion 1 upstream_gene_variant HET FN3215-S Chr6 26609728 C-T 0 0 Single Base Substitution 0 INTRON HET FN3215-S Chr6 29260603 29260604 0 0 Deletion 1 downstream_gene_variant HET FN3215-S Chr6 29396167 29396167 0 0 Insertion 3 INTERGENIC HET FN3215-S Chr6 5132678 5132679 0 0 Deletion 1 INTERGENIC HET FN3215-S Chr7 14493871 Chr1 41351273 0 Translocation 0 FN3215-S Chr7 16468844 16468844 0 0 Insertion 3 inframe_insertion HET LOC_Os07g28200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3215-S Chr7 8040498 T-A 0 0 Single Base Substitution 0 INTRON HET FN3215-S Chr8 12201826 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr8 13018664 13018672 0 0 Deletion 8 INTERGENIC HOMO FN3215-S Chr8 13020442 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3215-S Chr8 13020446 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3215-S Chr8 13040413 13040413 0 0 Insertion 4 upstream_gene_variant HET FN3215-S Chr8 17878185 17878188 0 0 Deletion 3 intron_variant HET FN3215-S Chr8 21465626 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr8 2693342 2693344 0 0 Deletion 2 upstream_gene_variant HET FN3215-S Chr8 6988769 6988769 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os08g11920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3215-S Chr9 14031770 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr9 16614711 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr9 18506589 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr9 20303939 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3215-S Chr9 20303941 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3215-S Chr9 20303942 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3215-S Chr9 4143138 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3215-S Chr9 4874891 4874891 0 0 Insertion 1 upstream_gene_variant HET FN3215-S Chr9 5809344 5809346 0 0 Deletion 2 INTERGENIC HET