FN3217-S Chr1 13189569 13460356 0 0 Inversion 270787 FN3217-S Chr1 13189571 13460362 0 0 Inversion 270791 FN3217-S Chr1 19654208 19654208 0 0 Insertion 1 upstream_gene_variant HET FN3217-S Chr1 23752177 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr1 29540473 29540475 0 0 Deletion 2 INTRON HET FN3217-S Chr1 37885725 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr1 3905569 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3217-S Chr1 5527444 5527445 0 0 Deletion 1 INTERGENIC HOMO FN3217-S Chr1 8104656 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3217-S Chr1 9999817 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g17370 retrotransposon protein, putative, unclassified, expressed FN3217-S Chr10 11432976 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr10 11909160 11909173 0 0 Deletion 13 INTRON HET FN3217-S Chr10 15896899 C-T 0 0 Single Base Substitution 0 INTRON HET FN3217-S Chr10 16638143 Chr2 27025135 0 Translocation 0 LOC_Os02g44599 expressed protein FN3217-S Chr10 2434259 Chr4 34198565 0 Translocation 0 FN3217-S Chr10 6983727 T-G 0 0 Single Base Substitution 0 INTRON HET FN3217-S Chr10 6984094 6984094 0 0 Insertion 2 upstream_gene_variant HET FN3217-S Chr10 7258478 A-G 0 0 Single Base Substitution 0 INTRON HET FN3217-S Chr11 14020203 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g24560 protein transport protein, putative, expressed FN3217-S Chr11 19735829 Chr9 17966312 0 Translocation 0 FN3217-S Chr11 6404746 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3217-S Chr11 769708 Chr3 11386189 0 Translocation 0 FN3217-S Chr11 8645212 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3217-S Chr12 10664031 10664034 0 0 Deletion 3 INTERGENIC HOMO FN3217-S Chr12 23358603 23358607 0 0 Deletion 4 INTRON HET FN3217-S Chr12 23699351 23699351 0 0 Insertion 8 upstream_gene_variant HET FN3217-S Chr12 26543827 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g42720 retrotransposon protein, putative, unclassified, expressed FN3217-S Chr12 26669953 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g42910 sodium/calcium exchanger protein, putative, expressed FN3217-S Chr12 26843549 26843552 0 0 Deletion 3 intergenic_region HET FN3217-S Chr2 29764645 29764645 0 0 Insertion 78 intron_variant HET FN3217-S Chr2 29819616 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr2 30693157 C-T 0 0 Single Base Substitution 0 INTRON HET FN3217-S Chr2 31647530 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr2 4074300 4074301 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os02g07780 OsSPL4 - SBP-box gene family member, expressed FN3217-S Chr2 4382654 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr2 4588851 4588852 0 0 Deletion 1 INTERGENIC HET FN3217-S Chr2 7882705 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g14370 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3217-S Chr3 12211175 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g21350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3217-S Chr3 12911001 12921000 0 0 Deletion 9999 FN3217-S Chr3 14159388 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr3 17028548 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3217-S Chr3 17052951 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr3 24587894 24587897 0 0 Deletion 3 upstream_gene_variant HET FN3217-S Chr3 24835372 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3217-S Chr3 32781032 32781040 0 0 Deletion 8 INTRON HOMO FN3217-S Chr3 35116275 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3217-S Chr3 5718479 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr3 5718480 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr3 5718481 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr3 9622217 9622217 0 0 Insertion 1 upstream_gene_variant HET FN3217-S Chr3 9830125 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr4 1230336 G-T 0 0 Single Base Substitution 0 INTRON HET FN3217-S Chr4 25995558 25995558 0 0 Insertion 1 upstream_gene_variant HET FN3217-S Chr4 33125496 33125499 0 0 Deletion 3 INTRON HET FN3217-S Chr4 482275 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr5 169904 169904 0 0 Insertion 6 INTERGENIC HET FN3217-S Chr5 18380812 18380813 0 0 Deletion 1 frameshift_variant HET LOC_Os05g31570 disease resistance protein RGA4, putative, expressed FN3217-S Chr5 24379609 24379610 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os05g41640 phosphoglycerate kinase protein, putative, expressed FN3217-S Chr5 24380692 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g41640 phosphoglycerate kinase protein, putative, expressed FN3217-S Chr5 3827519 Chr3 12921164 0 Translocation 0 FN3217-S Chr5 3841811 Chr3 12910926 0 Translocation 0 LOC_Os05g07260 phosphatidylinositolglycan-related, putative, expressed FN3217-S Chr6 20641101 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr6 27749138 27749151 0 0 Deletion 13 UTR_5_PRIME HOMO FN3217-S Chr6 4825115 4825144 0 0 Deletion 29 upstream_gene_variant HET FN3217-S Chr7 10511793 Chr1 19823229 0 Translocation 0 FN3217-S Chr7 21372188 G-A 0 0 Single Base Substitution 0 INTRON HET FN3217-S Chr7 23025757 23025757 0 0 Insertion 1 downstream_gene_variant HET FN3217-S Chr7 28388077 28388108 0 0 Deletion 31 INTERGENIC HOMO FN3217-S Chr7 29678207 29678217 0 0 Deletion 10 INTERGENIC HOMO FN3217-S Chr7 3930731 3930742 0 0 Deletion 11 upstream_gene_variant HET FN3217-S Chr7 6218672 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr7 7977557 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr8 10016076 10016077 0 0 Deletion 1 upstream_gene_variant HET FN3217-S Chr8 12580177 Chr7 27346312 0 Translocation 0 FN3217-S Chr8 16529890 C-A 0 0 Single Base Substitution 0 INTRON HET FN3217-S Chr8 26620581 26620581 0 0 Insertion 2 INTERGENIC HET FN3217-S Chr8 26773666 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr8 458364 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3217-S Chr9 5950870 5950870 0 0 Insertion 32 upstream_gene_variant HET FN3217-S Chr9 6311688 6311688 0 0 Insertion 4 upstream_gene_variant HET FN3217-S Chr9 7125885 7125886 0 0 Deletion 1 upstream_gene_variant HET FN3217-S Chr9 9182551 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g15130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed