FN3218-S Chr1 12528708 12528709 0 0 Deletion 1 upstream_gene_variant HET FN3218-S Chr1 16418044 16418045 0 0 Deletion 1 INTERGENIC HET FN3218-S Chr1 17540767 C-T 0 0 Single Base Substitution 0 INTRON HET FN3218-S Chr1 18903548 18903555 0 0 Deletion 7 FRAME_SHIFT HET LOC_Os01g34290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3218-S Chr1 21800462 21800463 0 0 Deletion 1 upstream_gene_variant HET FN3218-S Chr1 34827487 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g60220 transposon protein, putative, unclassified, expressed FN3218-S Chr1 35246223 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g60930 expressed protein FN3218-S Chr1 765208 765214 0 0 Deletion 6 INTERGENIC HOMO FN3218-S Chr1 9084109 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr10 13742558 13742558 0 0 Insertion 2 INTERGENIC HET FN3218-S Chr10 14406084 14465381 0 0 Inversion 59297 LOC_Os10g27300 expressed protein FN3218-S Chr10 14406096 14465385 0 0 Inversion 59289 LOC_Os10g27300 expressed protein FN3218-S Chr10 345410 345410 0 0 Insertion 3 INTRON HET FN3218-S Chr10 6496750 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr10 657432 657434 0 0 Deletion 2 INTRON HET FN3218-S Chr10 7221449 G-A 0 0 Single Base Substitution 0 INTRON HET FN3218-S Chr10 8524129 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr11 10344046 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3218-S Chr11 1148393 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3218-S Chr11 19052512 19052514 0 0 Deletion 2 UTR_3_PRIME HET FN3218-S Chr11 26082726 26082736 0 0 Deletion 10 INTERGENIC HET FN3218-S Chr11 5450951 5450953 0 0 Deletion 2 downstream_gene_variant HET FN3218-S Chr12 3831917 3831923 0 0 Deletion 6 intron_variant HET FN3218-S Chr12 9616791 9616791 0 0 Insertion 1 frameshift_variant HET LOC_Os12g16780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3218-S Chr2 13076701 13135080 0 0 Inversion 58379 LOC_Os02g22080 transposon protein, putative, unclassified, expressed FN3218-S Chr2 13087512 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr2 13087514 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr2 13910500 13916298 0 0 Inversion 5798 LOC_Os02g23990 retrotransposon protein, putative, unclassified, expressed FN3218-S Chr2 13910500 13916298 0 0 Inversion 5798 LOC_Os02g24010 expressed protein FN3218-S Chr2 13910504 13916311 0 0 Inversion 5807 LOC_Os02g23990 retrotransposon protein, putative, unclassified, expressed FN3218-S Chr2 13910504 13916311 0 0 Inversion 5807 LOC_Os02g24010 expressed protein FN3218-S Chr2 14754001 14802000 0 0 Deletion 47999 LOC_Os02g25310 zinc knuckle family protein, expressed FN3218-S Chr2 14754001 14802000 0 0 Deletion 47999 LOC_Os02g25320 transposon protein, putative, CACTA, En/Spm sub-class FN3218-S Chr2 14754001 14802000 0 0 Deletion 47999 LOC_Os02g25330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3218-S Chr2 14754001 14802000 0 0 Deletion 47999 LOC_Os02g25340 retrotransposon, putative, centromere-specific FN3218-S Chr2 14754001 14802000 0 0 Deletion 47999 LOC_Os02g25350 retrotransposon, putative, centromere-specific FN3218-S Chr2 14754001 14802000 0 0 Deletion 47999 LOC_Os02g25360 hypothetical protein FN3218-S Chr2 14754001 14802000 0 0 Deletion 47999 LOC_Os02g25370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3218-S Chr2 14754001 14802000 0 0 Deletion 47999 LOC_Os02g25380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3218-S Chr2 14754001 14802000 0 0 Deletion 47999 LOC_Os02g28970 expressed protein FN3218-S Chr2 14862258 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr2 5840482 5840493 0 0 Deletion 11 INTERGENIC HOMO FN3218-S Chr3 16888120 16888121 0 0 Deletion 1 upstream_gene_variant HET FN3218-S Chr3 16904862 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3218-S Chr3 17954274 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3218-S Chr3 22119698 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr3 28622005 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3218-S Chr3 391685 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g01630 expansin precursor, putative, expressed FN3218-S Chr4 31164146 31164148 0 0 Deletion 2 INTERGENIC HET FN3218-S Chr4 32797799 32797816 0 0 Deletion 17 FRAME_SHIFT HET LOC_Os04g55170 LTPL126 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3218-S Chr4 5050966 5050967 0 0 Deletion 1 INTERGENIC HOMO FN3218-S Chr5 10863274 10863284 0 0 Deletion 10 FRAME_SHIFT HOMO LOC_Os05g18740 retrotransposon protein, putative, unclassified, expressed FN3218-S Chr5 1322665 1322665 0 0 Insertion 4 upstream_gene_variant HET FN3218-S Chr5 16436976 16436976 0 0 Insertion 19 intergenic_region HET FN3218-S Chr5 17164180 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr5 28126708 C-T 0 0 Single Base Substitution 0 INTRON HET FN3218-S Chr6 10823902 10823902 0 0 Insertion 6 upstream_gene_variant HET FN3218-S Chr6 21021718 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr6 24377401 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr7 18141606 G-A 0 0 Single Base Substitution 0 INTRON HET FN3218-S Chr7 20054916 20054917 0 0 Deletion 1 downstream_gene_variant HET FN3218-S Chr7 21835145 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3218-S Chr7 21948423 C-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os07g36670 retrotransposon protein, putative, unclassified, expressed FN3218-S Chr7 7176753 7176756 0 0 Deletion 3 INTERGENIC HOMO FN3218-S Chr7 7920448 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g13830 OsFBX228 - F-box domain containing protein, expressed FN3218-S Chr7 9953371 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3218-S Chr8 11996519 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr8 18325386 A-G 0 0 Single Base Substitution 0 INTRON HET FN3218-S Chr8 18878724 18878731 0 0 Deletion 7 INTRON HET FN3218-S Chr8 19835154 T-A 0 0 Single Base Substitution 0 INTRON HET FN3218-S Chr8 21321596 21321605 0 0 Deletion 9 INTERGENIC HET FN3218-S Chr8 27494219 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3218-S Chr8 27591241 27591259 0 0 Deletion 18 INTRON HOMO FN3218-S Chr8 27746761 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3218-S Chr9 10404865 A-G 0 0 Single Base Substitution 0 INTRON HET FN3218-S Chr9 22517545 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3218-S Chr9 3810655 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g07600 retrotransposon protein, putative, unclassified, expressed FN3218-S Chr9 6805404 6805410 0 0 Deletion 6 INTRON HOMO