FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02900 glycosyltransferase, putative, expressed FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02910 glycosyltransferase, putative, expressed FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02920 glycosyltransferase protein, putative, expressed FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02930 glycosyltransferase protein, putative, expressed FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02940 glycosyltransferase protein, putative, expressed FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02950 expressed protein FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02960 expressed protein FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02970 retrotransposon protein, putative, unclassified, expressed FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02980 expressed protein FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g02990 expressed protein FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g03010 expressed protein FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g03020 tRNA synthetase class I, putative, expressed FN3219-S Chr1 1041001 1153000 0 0 Deletion 111999 LOC_Os01g26240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3219-S Chr1 16268661 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3219-S Chr1 16716751 A-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3219-S Chr1 30700285 31015377 0 0 Inversion 315092 FN3219-S Chr1 30700298 31015381 0 0 Inversion 315083 FN3219-S Chr1 33614187 33614193 0 0 Deletion 6 CODON_DELETION HET LOC_Os01g58114 expressed protein FN3219-S Chr1 3608290 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr1 37747254 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g65030 S-locus-specific glycoprotein precursor, putative, expressed FN3219-S Chr1 3951099 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr1 41394541 41394542 0 0 Deletion 1 INTERGENIC HET FN3219-S Chr1 7976644 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr10 1429766 1429911 0 0 Inversion 145 FN3219-S Chr10 15621383 15621383 0 0 Insertion 2 UTR_5_PRIME HET FN3219-S Chr10 17998445 17998445 0 0 Insertion 18 upstream_gene_variant HET FN3219-S Chr10 18941317 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3219-S Chr10 8620594 Chr1 12471949 0 Translocation 0 FN3219-S Chr10 912536 912536 0 0 Insertion 1 intron_variant HET FN3219-S Chr11 13479303 T-C 0 0 Single Base Substitution 0 INTRON HET FN3219-S Chr11 18703647 18703647 0 0 Insertion 2 upstream_gene_variant HET FN3219-S Chr11 24819626 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3219-S Chr11 25723965 25723966 0 0 Deletion 1 INTERGENIC HOMO FN3219-S Chr11 7774137 7774334 0 0 Inversion 197 FN3219-S Chr11 9626681 9626687 0 0 Deletion 6 upstream_gene_variant HET FN3219-S Chr12 1898014 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3219-S Chr12 23024144 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr12 23073068 23073237 0 0 Inversion 169 LOC_Os12g37580 ABC transporter, ATP-binding protein, putative, expressed FN3219-S Chr12 23688061 23688349 0 0 Inversion 288 LOC_Os12g38570 transmembrane amino acid transporter protein, putative, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39450 expressed protein FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39460 hypothetical protein FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39470 hypothetical protein FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39480 expressed protein FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39490 retrotransposon protein, putative, unclassified FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39510 hypothetical protein FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39520 OsFBDUF66 - F-box and DUF domain containing protein, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39530 hypothetical protein FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39540 transposon protein, putative, Ac/Ds sub-class FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39550 hypothetical protein FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39560 expressed protein FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39570 transposon protein, putative, unclassified, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39580 retrotransposon protein, putative, unclassified, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39590 retrotransposon protein, putative, unclassified, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39600 retrotransposon protein, putative, unclassified, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39620 disease resistance protein, putative, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39630 CAMK_CAMK_like.49 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39640 MYB family transcription factor, putative, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39650 tubulin, putative, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39660 calcium-transporting ATPase, plasma membrane-type, putative, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39670 expressed protein FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39680 retrotransposon protein, putative, unclassified, expressed FN3219-S Chr12 24273001 24511000 0 0 Deletion 237999 LOC_Os12g39690 hypothetical protein FN3219-S Chr12 24393553 Chr6 19207692 0 Translocation 0 FN3219-S Chr12 24404957 24404958 0 0 Deletion 1 upstream_gene_variant HET FN3219-S Chr12 4424841 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr12 8316001 8326000 0 0 Deletion 9999 LOC_Os12g16530 hypothetical protein FN3219-S Chr12 8325719 Chr6 1390531 0 Translocation 0 LOC_Os06g03600 transcriptional corepressor SEUSS, putative, expressed FN3219-S Chr12 8327164 Chr6 1390516 0 Translocation 0 LOC_Os06g03600 transcriptional corepressor SEUSS, putative, expressed FN3219-S Chr2 10049419 10049421 0 0 Deletion 2 INTERGENIC HET FN3219-S Chr2 10946078 T-A 0 0 Single Base Substitution 0 INTRON HET FN3219-S Chr2 15681313 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr2 34305465 C-T 0 0 Single Base Substitution 0 INTRON HET FN3219-S Chr2 35512140 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr3 17360896 17360919 0 0 Deletion 23 INTERGENIC HET FN3219-S Chr3 25901518 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3219-S Chr3 28622379 G-A 0 0 Single Base Substitution 0 INTRON HET FN3219-S Chr3 32364484 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3219-S Chr3 34733801 34734136 0 0 Inversion 335 LOC_Os03g61150 expressed protein FN3219-S Chr3 4984424 4984425 0 0 Deletion 1 INTERGENIC HOMO FN3219-S Chr3 8340131 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g15250 lectin-like receptor kinase, putative, expressed FN3219-S Chr3 8343466 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g15250 lectin-like receptor kinase, putative, expressed FN3219-S Chr4 13572220 13572221 0 0 Deletion 1 INTRON HET FN3219-S Chr4 14066032 14066179 0 0 Inversion 147 FN3219-S Chr4 1472629 1472630 0 0 Deletion 1 upstream_gene_variant HET FN3219-S Chr4 15949793 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g26970 retrotransposon protein, putative, unclassified FN3219-S Chr4 25237781 25237782 0 0 Deletion 1 INTERGENIC HOMO FN3219-S Chr4 29714098 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr4 3055859 Chr3 34057198 0 Translocation 0 LOC_Os03g59810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3219-S Chr4 3055859 Chr3 34057198 0 Translocation 0 LOC_Os04g05900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3219-S Chr4 31581821 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3219-S Chr4 3646858 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr5 10649001 10670000 0 0 Deletion 20999 LOC_Os05g18446 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3219-S Chr5 10649001 10670000 0 0 Deletion 20999 LOC_Os05g23180 transposon protein, putative, unclassified FN3219-S Chr5 11562686 11562717 0 0 Deletion 31 downstream_gene_variant HET FN3219-S Chr5 2145586 2145586 0 0 Insertion 6 intron_variant HET FN3219-S Chr5 25076536 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr5 25436725 25436725 0 0 Insertion 1 downstream_gene_variant HET FN3219-S Chr5 5969576 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr5 5971003 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr6 2617627 C-T 0 0 Single Base Substitution 0 INTRON HET FN3219-S Chr6 29336028 29336028 0 0 Insertion 38 frameshift_variant HET LOC_Os06g48490 retrotransposon protein, putative, unclassified FN3219-S Chr6 9180358 9180364 0 0 Deletion 6 INTERGENIC HET FN3219-S Chr7 14900021 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g25960 retrotransposon protein, putative, unclassified, expressed FN3219-S Chr7 14900022 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3219-S Chr7 14900023 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g25960 retrotransposon protein, putative, unclassified, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31884 MATE efflux family protein, putative, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31930 hypothetical protein FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31940 phosphoribosylanthranilate transferase, 3 partial, putative FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31950 expressed protein FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31960 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31980 retrotransposon protein, putative, unclassified, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g31990 transposon protein, putative, unclassified, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32000 expressed protein FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32010 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32020 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32040 eukaryotic translation initiation factor 3 subunit E, putative, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32050 expressed protein FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32060 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32070 expressed protein FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32080 transcription initiation factor IIB, putative, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32090 expressed protein FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32100 expressed protein FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32110 transposon protein, putative, unclassified, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32120 transcription initiation factor IIB, putative, expressed FN3219-S Chr7 18932001 19084000 0 0 Deletion 151999 LOC_Os07g32550 dimethyladenosine transferase, putative, expressed FN3219-S Chr7 19127594 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr7 19457103 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr7 21286042 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr7 24086512 Chr6 22803769 0 Translocation 0 FN3219-S Chr7 28093270 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3219-S Chr7 28723643 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07370 zinc finger A20 domain-containing stress-associated protein 18, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07380 expressed protein FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07390 OsWAK66 - OsWAK pseudogene, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07400 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07410 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07420 gibberellin 20 oxidase 1-B, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07430 CAF1 family ribonuclease containing protein, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07440 versicolorin reductase, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07450 versicolorin reductase, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07460 hypothetical protein FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07470 transketolase, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07480 HNH endonuclease domain-containing protein, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07490 YT521-B, putative, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07500 expressed protein FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07510 expressed protein FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g07520 OsFBX217 - F-box domain containing protein, expressed FN3219-S Chr7 3683001 3750000 0 0 Deletion 66999 LOC_Os07g09560 ankyrin repeat family protein, putative, expressed FN3219-S Chr7 6485052 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr8 12104566 12104566 0 0 Insertion 20 intron_variant HET FN3219-S Chr8 13246755 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr8 14369782 14370043 0 0 Inversion 261 FN3219-S Chr8 15896008 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3219-S Chr8 1595504 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr8 16831953 16838329 0 0 Inversion 6376 FN3219-S Chr8 16831956 16838358 0 0 Inversion 6402 FN3219-S Chr8 19282080 19282081 0 0 Deletion 1 INTERGENIC HOMO FN3219-S Chr8 20721746 A-G 0 0 Single Base Substitution 0 INTRON HET FN3219-S Chr8 27530336 Chr1 23901721 0 Translocation 0 LOC_Os08g43530 OsFBX306 - F-box domain containing protein, expressed FN3219-S Chr8 6264536 6264551 0 0 Deletion 15 INTERGENIC HOMO FN3219-S Chr9 10769552 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3219-S Chr9 17798062 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3219-S Chr9 987222 987222 0 0 Insertion 12 INTERGENIC HET