FN3221-S Chr1 16207692 16640442 0 0 Inversion 432750 LOC_Os01g28930 expressed protein FN3221-S Chr1 16207704 16640448 0 0 Inversion 432744 LOC_Os01g28930 expressed protein FN3221-S Chr1 16905075 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g30956 retrotransposon protein, putative, unclassified, expressed FN3221-S Chr1 18477918 18477936 0 0 Deletion 18 upstream_gene_variant HET FN3221-S Chr1 26224148 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3221-S Chr1 28128354 28266668 0 0 Inversion 138314 FN3221-S Chr1 28128357 28266679 0 0 Inversion 138322 FN3221-S Chr1 30043430 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3221-S Chr1 30668094 30668106 0 0 Deletion 12 CODON_DELETION HET LOC_Os01g53370 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed FN3221-S Chr1 33984316 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr1 40653094 40653102 0 0 Deletion 8 INTERGENIC HET FN3221-S Chr1 41282843 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3221-S Chr10 13127226 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3221-S Chr10 13693169 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr10 14255434 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr10 1493385 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3221-S Chr10 7651429 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g14060 retrotransposon protein, putative, unclassified FN3221-S Chr10 9639907 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3221-S Chr11 24871543 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3221-S Chr11 7700797 7700799 0 0 Deletion 2 INTERGENIC HOMO FN3221-S Chr12 10987764 G-T 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr12 11505919 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr12 15827519 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr12 17093428 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g28920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3221-S Chr12 17096932 17096932 0 0 Insertion 1 frameshift_variant HET LOC_Os12g28920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3221-S Chr12 20180525 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3221-S Chr2 20743416 20743417 0 0 Deletion 1 upstream_gene_variant HET FN3221-S Chr2 2106504 2106504 0 0 Insertion 2 UTR_5_PRIME HET FN3221-S Chr2 27827307 27827307 0 0 Insertion 44 upstream_gene_variant HET FN3221-S Chr2 32191001 32198000 0 0 Deletion 6999 LOC_Os02g52640 xyloglucan fucosyltransferase, putative, expressed FN3221-S Chr2 32191001 32198000 0 0 Deletion 6999 LOC_Os03g02640 methylthioribose kinase, putative, expressed FN3221-S Chr2 926274 926291 0 0 Deletion 17 UTR_3_PRIME HOMO FN3221-S Chr2 9610500 9610506 0 0 Deletion 6 upstream_gene_variant HET FN3221-S Chr3 11145763 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr3 14621758 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr3 15238103 Chr2 3401798 0 Translocation 0 FN3221-S Chr3 23673071 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g42540 transposon protein, putative, CACTA, En/Spm sub-class FN3221-S Chr3 25517655 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr3 25577455 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3221-S Chr3 29018335 29018338 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os03g50810 receptor protein kinase TMK1 precursor, putative, expressed FN3221-S Chr3 29874538 G-C 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr3 29902177 A-C 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr3 3059637 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3221-S Chr3 35160076 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr3 36205284 36205284 0 0 Insertion 3 INTERGENIC HET FN3221-S Chr3 4603632 4632230 0 0 Inversion 28598 FN3221-S Chr3 4603635 4632232 0 0 Inversion 28597 FN3221-S Chr3 5665987 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3221-S Chr3 7907665 7907665 0 0 Insertion 2 UTR_5_PRIME HET FN3221-S Chr4 10714755 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr4 14891750 14891751 0 0 Deletion 1 downstream_gene_variant HET FN3221-S Chr4 16204951 16204956 0 0 Deletion 5 INTERGENIC HOMO FN3221-S Chr4 24853582 24853597 0 0 Deletion 15 INTRON HOMO FN3221-S Chr4 31009145 G-A 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr4 31644812 31644812 0 0 Insertion 1 downstream_gene_variant HET FN3221-S Chr4 32427590 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr4 34447462 34447463 0 0 Deletion 1 INTERGENIC HET FN3221-S Chr4 7271076 A-T 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr4 9493146 9493148 0 0 Deletion 2 INTRON HET FN3221-S Chr5 13040392 T-C 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr5 15552001 15615000 0 0 Deletion 62999 LOC_Os05g26820 CAMK_KIN1/SNF1/Nim1_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3221-S Chr5 15552001 15615000 0 0 Deletion 62999 LOC_Os05g26830 expressed protein FN3221-S Chr5 15552001 15615000 0 0 Deletion 62999 LOC_Os05g26840 permease domain containing protein, putative, expressed FN3221-S Chr5 15552001 15615000 0 0 Deletion 62999 LOC_Os05g26850 hypothetical protein FN3221-S Chr5 15552001 15615000 0 0 Deletion 62999 LOC_Os05g26860 expressed protein FN3221-S Chr5 15552001 15615000 0 0 Deletion 62999 LOC_Os05g26870 CAMK_KIN1/SNF1/Nim1_like.21 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3221-S Chr5 15552001 15615000 0 0 Deletion 62999 LOC_Os05g26890 G-protein alpha subunit, putative, expressed FN3221-S Chr5 15552001 15615000 0 0 Deletion 62999 LOC_Os05g34540 rab GDP dissociation inhibitor alpha, putative, expressed FN3221-S Chr5 25245731 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr5 25466917 25466918 0 0 Deletion 1 INTERGENIC HOMO FN3221-S Chr5 25525719 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3221-S Chr5 25571137 25571486 0 0 Inversion 349 FN3221-S Chr5 25835397 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3221-S Chr6 11956148 T-G 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr6 12006873 12006889 0 0 Deletion 16 upstream_gene_variant HET FN3221-S Chr6 18639219 18639219 0 0 Insertion 1 upstream_gene_variant HET FN3221-S Chr6 22192620 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3221-S Chr6 29165227 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN3221-S Chr6 3077381 G-C 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr7 19913844 Chr4 22060737 0 Translocation 0 LOC_Os04g36570 expressed protein FN3221-S Chr7 19914517 Chr4 22060746 0 Translocation 0 LOC_Os04g36570 expressed protein FN3221-S Chr7 19914517 Chr4 22060746 0 Translocation 0 LOC_Os07g33310 MATE efflux family protein, putative, expressed FN3221-S Chr7 2099830 2099834 0 0 Deletion 4 INTRON HET FN3221-S Chr7 22603298 22603299 0 0 Deletion 1 INTERGENIC HOMO FN3221-S Chr7 23025543 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr7 24850981 24850981 0 0 Insertion 63 upstream_gene_variant HET FN3221-S Chr7 2514793 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr7 27276651 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3221-S Chr7 27759503 27759504 0 0 Deletion 1 INTERGENIC HOMO FN3221-S Chr7 6082689 6082781 0 0 Deletion 92 upstream_gene_variant HET FN3221-S Chr7 9247934 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3221-S Chr8 10852320 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3221-S Chr8 13818626 13818633 0 0 Deletion 7 INTERGENIC HOMO FN3221-S Chr8 18783316 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr8 18783317 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr8 22256365 22256365 0 0 Insertion 1 downstream_gene_variant HET FN3221-S Chr8 2316747 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3221-S Chr8 4140038 A-T 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr8 4140041 T-C 0 0 Single Base Substitution 0 INTRON HET FN3221-S Chr9 10912548 Chr5 5898812 0 Translocation 0 FN3221-S Chr9 10912878 Chr5 15553704 0 Translocation 0 LOC_Os05g26810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3221-S Chr9 10912891 Chr5 15213734 0 Translocation 0