FN3222-S Chr1 12871837 12871949 0 0 Inversion 112 LOC_Os01g22900 neutral/alkaline invertase, putative, expressed FN3222-S Chr1 14045450 14045450 0 0 Insertion 8 upstream_gene_variant HET FN3222-S Chr1 19718518 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr1 27429073 27429073 0 0 Insertion 2 upstream_gene_variant HET FN3222-S Chr1 42461969 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3222-S Chr1 5270183 5270183 0 0 Insertion 2 UTR_3_PRIME HET FN3222-S Chr10 1294169 Chr5 13907391 0 Translocation 0 LOC_Os05g24110 retrotransposon protein, putative, unclassified, expressed FN3222-S Chr10 1294176 Chr5 13907553 0 Translocation 0 FN3222-S Chr10 15468601 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3222-S Chr10 19243724 19243725 0 0 Deletion 1 upstream_gene_variant HET FN3222-S Chr10 19621380 G-A 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr10 7192246 G-C 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr11 13255409 G-A 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr11 14038567 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g24600 expressed protein FN3222-S Chr11 25098877 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr11 7129008 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr11 7778548 8668795 0 0 Inversion 890247 FN3222-S Chr11 8602958 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g15240 retrotransposon protein, putative, unclassified, expressed FN3222-S Chr11 8653901 8668692 0 0 Inversion 14791 FN3222-S Chr11 9031433 Chr7 23098250 0 Translocation 0 FN3222-S Chr11 9650770 C-A 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr12 11016874 11016874 0 0 Insertion 1 downstream_gene_variant HET FN3222-S Chr12 12994990 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr12 456549 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr12 4925533 Chr6 1603851 0 Translocation 0 FN3222-S Chr12 5071425 Chr6 1439554 0 Translocation 0 LOC_Os12g09620 expressed protein FN3222-S Chr12 6719187 6719187 0 0 Insertion 64 upstream_gene_variant HET FN3222-S Chr12 9015428 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr2 13413931 A-G 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr2 1897949 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr2 1897950 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr2 22322572 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr2 4042426 Chr1 7147934 0 Translocation 0 FN3222-S Chr2 4042890 Chr1 5951819 0 Translocation 0 FN3222-S Chr2 7323268 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr2 8340865 G-T 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr2 8352695 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr3 14776801 14776802 0 0 Deletion 1 upstream_gene_variant HET FN3222-S Chr3 32306243 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr3 35561766 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr3 5732480 C-T 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr3 6277322 6277323 0 0 Deletion 1 INTRON HET FN3222-S Chr3 7233881 7233881 0 0 Insertion 2 INTERGENIC HET FN3222-S Chr3 9418924 9418925 0 0 Deletion 1 UTR_3_PRIME HET FN3222-S Chr4 11285643 11285648 0 0 Deletion 5 INTRON HET FN3222-S Chr4 12911663 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr4 13753597 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr4 17622258 17622258 0 0 Insertion 48 downstream_gene_variant HET FN3222-S Chr4 20918793 T-G 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr4 28953747 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g48580 retrotransposon protein, putative, unclassified, expressed FN3222-S Chr4 32139295 T-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3222-S Chr4 34572440 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr4 34722443 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr4 8234687 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr5 22687618 22687624 0 0 Deletion 6 INTERGENIC HET FN3222-S Chr5 23842832 23842838 0 0 Deletion 6 upstream_gene_variant HET FN3222-S Chr5 4011866 4011867 0 0 Deletion 1 downstream_gene_variant HET FN3222-S Chr5 8664270 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3222-S Chr6 14675875 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr6 1595897 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3222-S Chr6 19273782 Chr5 2247282 0 Translocation 0 LOC_Os05g04740 helix-loop-helix DNA-binding domain containing protein, expressed FN3222-S Chr6 20092731 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr6 23772408 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr6 24200660 C-T 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr6 26262835 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr6 30228545 30228796 0 0 Inversion 251 FN3222-S Chr6 4544642 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr6 7518997 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr7 11399654 11399830 0 0 Deletion 176 frameshift_variant HET LOC_Os07g19250 transposon protein, putative, unclassified FN3222-S Chr7 15810734 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g27200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3222-S Chr7 19258963 19258963 0 0 Insertion 1 3_prime_UTR_variant HET FN3222-S Chr7 1965034 2115441 0 0 Inversion 150407 FN3222-S Chr7 1965036 2115441 0 0 Inversion 150405 FN3222-S Chr7 22233342 22233342 0 0 Insertion 1 downstream_gene_variant HET FN3222-S Chr7 27301553 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr7 8226557 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3222-S Chr7 8404042 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr8 11497741 11497795 0 0 Deletion 54 intron_variant HET FN3222-S Chr8 13155388 C-G 0 0 Single Base Substitution 0 INTRON HET FN3222-S Chr8 16542493 16551207 0 0 Inversion 8714 FN3222-S Chr8 16542494 16551208 0 0 Inversion 8714 FN3222-S Chr8 19928606 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr8 8193004 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr9 1349112 1349114 0 0 Deletion 2 INTERGENIC HET FN3222-S Chr9 18623957 18623980 0 0 Deletion 23 upstream_gene_variant HET FN3222-S Chr9 21692505 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g37630 transposon protein, putative, unclassified, expressed FN3222-S Chr9 4900406 4900406 0 0 Insertion 1 upstream_gene_variant HET FN3222-S Chr9 8101543 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3222-S Chr9 8742002 8742003 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os09g14720 retrotransposon protein, putative, unclassified, expressed