FN3223-S Chr1 14371578 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3223-S Chr1 15553571 15553594 0 0 Deletion 23 INTERGENIC HOMO FN3223-S Chr1 157779 157809 0 0 Deletion 30 disruptive_inframe_deletion HET LOC_Os01g01320 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3223-S Chr1 158016 158016 0 0 Insertion 1 frameshift_variant HET LOC_Os01g01320 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3223-S Chr1 21881050 C-T 0 0 Single Base Substitution 0 INTRON HET FN3223-S Chr1 32568177 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3223-S Chr1 38427405 38427406 0 0 Deletion 1 upstream_gene_variant HET FN3223-S Chr10 11007445 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g21490 expressed protein FN3223-S Chr10 15203369 15203369 0 0 Insertion 2 INTERGENIC HET FN3223-S Chr10 8908912 8909125 0 0 Inversion 213 LOC_Os10g17630 B3 DNA binding domain containing protein, expressed FN3223-S Chr11 13247278 13445197 0 0 Inversion 197919 LOC_Os11g23770 cysteine protease, putative, expressed FN3223-S Chr11 13247288 13445271 0 0 Inversion 197983 LOC_Os11g23770 cysteine protease, putative, expressed FN3223-S Chr11 13667642 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr11 14491803 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr11 15827296 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr11 18081494 18081495 0 0 Deletion 1 upstream_gene_variant HET FN3223-S Chr11 19842605 Chr1 19348949 0 Translocation 0 FN3223-S Chr11 21013962 21013963 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os11g35800 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3223-S Chr11 4527909 4527910 0 0 Deletion 1 intron_variant HET FN3223-S Chr11 4845284 Chr4 30958425 0 Translocation 0 FN3223-S Chr11 5267295 Chr5 13676750 0 Translocation 0 FN3223-S Chr12 10883302 Chr2 25322026 0 Translocation 0 FN3223-S Chr12 12183087 Chr2 9649794 0 Translocation 0 FN3223-S Chr12 13318573 13318573 0 0 Insertion 1 downstream_gene_variant HET FN3223-S Chr12 14974726 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr12 15790017 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr12 16949077 16949077 0 0 Insertion 1 upstream_gene_variant HET FN3223-S Chr12 19211759 Chr2 10855496 0 Translocation 0 LOC_Os02g18620 expressed protein FN3223-S Chr12 2005847 Chr2 19680995 0 Translocation 0 FN3223-S Chr12 20732103 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g34200 OsFBX450 - F-box domain containing protein, expressed FN3223-S Chr12 22550206 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g36780 retrotransposon protein, putative, unclassified, expressed FN3223-S Chr12 23130077 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr12 26666147 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr12 9402093 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr2 13029347 13029347 0 0 Insertion 1 upstream_gene_variant HET FN3223-S Chr2 13432504 13432507 0 0 Deletion 3 upstream_gene_variant HET FN3223-S Chr2 15245889 G-A 0 0 Single Base Substitution 0 INTRON HET FN3223-S Chr2 16294121 C-T 0 0 Single Base Substitution 0 INTRON HET FN3223-S Chr2 1673299 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g03940 expressed protein FN3223-S Chr2 17156429 17156627 0 0 Inversion 198 LOC_Os02g28980 peptidyl-prolyl isomerase, putative, expressed FN3223-S Chr2 2604297 2604298 0 0 Deletion 1 upstream_gene_variant HET FN3223-S Chr2 7073843 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr3 15426830 15426831 0 0 Deletion 1 INTERGENIC HET FN3223-S Chr3 15793848 15793849 0 0 Deletion 1 upstream_gene_variant HET FN3223-S Chr3 22820351 22820357 0 0 Deletion 6 INTERGENIC HOMO FN3223-S Chr3 5197126 5197127 0 0 Deletion 1 downstream_gene_variant HET FN3223-S Chr4 19593521 19593527 0 0 Deletion 6 CODON_DELETION HOMO LOC_Os04g32540 OsSCP24 - Putative Serine Carboxypeptidase homologue, expressed FN3223-S Chr4 30507134 30507134 0 0 Insertion 4 INTERGENIC HET FN3223-S Chr4 34499168 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3223-S Chr5 19612423 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g33390 cation-transporting ATPase, putative, expressed FN3223-S Chr5 28886672 28886673 0 0 Deletion 1 upstream_gene_variant HET FN3223-S Chr5 3174844 Chr2 13584625 0 Translocation 0 FN3223-S Chr5 5212055 Chr1 26217213 0 Translocation 0 FN3223-S Chr5 5890607 5890607 0 0 Insertion 1 downstream_gene_variant HET FN3223-S Chr5 6371577 6371579 0 0 Deletion 2 upstream_gene_variant HET FN3223-S Chr5 8134150 8134161 0 0 Deletion 11 FRAME_SHIFT HET LOC_Os05g14420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3223-S Chr6 10755062 10755063 0 0 Deletion 1 upstream_gene_variant HET FN3223-S Chr6 10955644 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr6 18637639 18637640 0 0 Deletion 1 upstream_gene_variant HET FN3223-S Chr6 18870148 18870149 0 0 Deletion 1 frameshift_variant HET LOC_Os06g32450 retrotransposon protein, putative, Ty3-gypsy subclass FN3223-S Chr6 22635786 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr6 25066084 25066084 0 0 Insertion 1 INTERGENIC HET FN3223-S Chr6 30632753 30632754 0 0 Deletion 1 upstream_gene_variant HET FN3223-S Chr7 13248267 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3223-S Chr7 14221291 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3223-S Chr7 2154992 2155009 0 0 Deletion 17 INTERGENIC HOMO FN3223-S Chr7 5755682 C-T 0 0 Single Base Substitution 0 INTRON HET FN3223-S Chr7 6210212 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g11260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3223-S Chr7 6283230 6283232 0 0 Deletion 2 upstream_gene_variant HET FN3223-S Chr7 8953033 8953035 0 0 Deletion 2 upstream_gene_variant HET FN3223-S Chr8 16104393 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g26430 transposon protein, putative, unclassified, expressed FN3223-S Chr8 19475034 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3223-S Chr8 26299548 Chr2 25044491 0 Translocation 0 FN3223-S Chr8 2994270 2994270 0 0 Insertion 2 INTERGENIC HOMO FN3223-S Chr8 366206 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3223-S Chr8 4755255 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr8 6973838 6973839 0 0 Deletion 1 downstream_gene_variant HET FN3223-S Chr8 7844749 7844749 0 0 Insertion 1 downstream_gene_variant HET FN3223-S Chr9 14182830 14182830 0 0 Insertion 2 upstream_gene_variant HET FN3223-S Chr9 16799034 16799046 0 0 Deletion 12 downstream_gene_variant HET FN3223-S Chr9 17894609 C-T 0 0 Single Base Substitution 0 INTRON HET FN3223-S Chr9 18554450 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3223-S Chr9 19012395 G-A 0 0 Single Base Substitution 0 INTRON HET