FN3227-S Chr1 11884277 11884279 0 0 Deletion 2 INTERGENIC HET FN3227-S Chr1 16269319 16269319 0 0 Insertion 1 downstream_gene_variant HET FN3227-S Chr1 18359635 18359638 0 0 Deletion 3 CODON_DELETION HOMO LOC_Os01g33324 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3227-S Chr1 1906402 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr1 20352373 20352375 0 0 Deletion 2 UTR_3_PRIME HET FN3227-S Chr1 27819413 27819413 0 0 Insertion 26 downstream_gene_variant HET FN3227-S Chr1 28613305 28613307 0 0 Deletion 2 INTERGENIC HET FN3227-S Chr1 30666817 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g53370 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed FN3227-S Chr1 34932501 34932501 0 0 Insertion 1 upstream_gene_variant HET FN3227-S Chr1 39690288 39690289 0 0 Deletion 1 UTR_3_PRIME HET FN3227-S Chr1 871582 871582 0 0 Insertion 58 downstream_gene_variant HET FN3227-S Chr10 10128690 10128691 0 0 Deletion 1 upstream_gene_variant HET FN3227-S Chr10 194579 194582 0 0 Deletion 3 upstream_gene_variant HET FN3227-S Chr10 19564731 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr10 2646609 2646610 0 0 Deletion 1 upstream_gene_variant HET FN3227-S Chr10 3064940 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g06030 OsWAK103 - OsWAK receptor-like protein kinase, expressed FN3227-S Chr11 15028448 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr11 15882963 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3227-S Chr11 18786678 18786685 0 0 Deletion 7 INTRON HET FN3227-S Chr11 19629376 19629385 0 0 Deletion 9 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os11g33170 expressed protein FN3227-S Chr11 20200604 20200605 0 0 Deletion 1 upstream_gene_variant HET FN3227-S Chr11 21132182 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr11 22688678 22688678 0 0 Insertion 33 upstream_gene_variant HET FN3227-S Chr11 23768115 23768116 0 0 Deletion 1 frameshift_variant HET LOC_Os11g39870 retrotransposon protein, putative, unclassified, expressed FN3227-S Chr11 27810238 27810239 0 0 Deletion 1 downstream_gene_variant HET FN3227-S Chr11 5387063 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr11 7920716 7920717 0 0 Deletion 1 downstream_gene_variant HET FN3227-S Chr11 8175197 8175197 0 0 Insertion 6 downstream_gene_variant HET FN3227-S Chr12 11875546 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3227-S Chr12 18527485 Chr11 14827073 0 Translocation 0 FN3227-S Chr12 26428094 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3227-S Chr12 3140797 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3227-S Chr12 4407609 4407610 0 0 Deletion 1 downstream_gene_variant HET FN3227-S Chr12 8402035 Chr6 13377163 0 Translocation 0 FN3227-S Chr2 12647073 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3227-S Chr2 26793248 26793248 0 0 Insertion 15 upstream_gene_variant HET FN3227-S Chr2 31266368 31266370 0 0 Deletion 2 UTR_5_PRIME HOMO FN3227-S Chr2 35278849 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3227-S Chr2 3560791 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3227-S Chr2 6757799 6757799 0 0 Insertion 2 INTERGENIC HET FN3227-S Chr3 1018875 G-C 0 0 Single Base Substitution 0 INTRON HET FN3227-S Chr3 19055489 19348430 0 0 Inversion 292941 LOC_Os03g33870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3227-S Chr3 19055500 19348440 0 0 Inversion 292940 LOC_Os03g33870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3227-S Chr3 34595815 34595822 0 0 Deletion 7 INTRON HOMO FN3227-S Chr3 7251319 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3227-S Chr4 12862478 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g22690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3227-S Chr4 13252001 13296000 0 0 Deletion 43999 LOC_Os04g23250 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3227-S Chr4 13252001 13296000 0 0 Deletion 43999 LOC_Os04g23260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3227-S Chr4 13252001 13296000 0 0 Deletion 43999 LOC_Os04g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3227-S Chr4 13252001 13296000 0 0 Deletion 43999 LOC_Os04g23280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3227-S Chr4 13252001 13296000 0 0 Deletion 43999 LOC_Os04g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3227-S Chr4 13252001 13296000 0 0 Deletion 43999 LOC_Os04g30690 NBS type disease resistance protein, putative, expressed FN3227-S Chr4 15212919 C-G 0 0 Single Base Substitution 0 INTRON HET FN3227-S Chr4 3491684 3491684 0 0 Insertion 5 frameshift_variant&splice_region_variant HET LOC_Os04g06630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3227-S Chr4 6291659 6747853 0 0 Inversion 456194 FN3227-S Chr4 6291663 6747855 0 0 Inversion 456192 FN3227-S Chr4 9657809 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g17640 retrotransposon protein, putative, unclassified, expressed FN3227-S Chr5 10776503 T-G 0 0 Single Base Substitution 0 INTRON HET FN3227-S Chr5 15826728 15826729 0 0 Deletion 1 upstream_gene_variant HET FN3227-S Chr5 16564419 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr5 20516812 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g34600 no apical meristem protein, putative, expressed FN3227-S Chr5 24227394 24227394 0 0 Insertion 20 upstream_gene_variant HET FN3227-S Chr5 28155595 T-C 0 0 Single Base Substitution 0 INTRON HET FN3227-S Chr5 28594647 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr5 8289515 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr5 9221214 G-A 0 0 Single Base Substitution 0 INTRON HET FN3227-S Chr6 10378122 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g17880 NBS-LRR disease resistance protein, putative, expressed FN3227-S Chr6 10457321 Chr1 34461752 0 Translocation 0 FN3227-S Chr6 10457347 Chr1 34526468 0 Translocation 0 LOC_Os01g59680 NHL25, putative, expressed FN3227-S Chr6 12973705 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr6 15853422 15853434 0 0 Deletion 12 disruptive_inframe_deletion HET LOC_Os06g27940 retrotransposon protein, putative, Ty3-gypsy subclass FN3227-S Chr6 16904080 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr6 26764325 26764326 0 0 Deletion 1 INTERGENIC HET FN3227-S Chr6 6784935 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr7 12102181 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr7 15010427 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr7 16166952 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr7 16166957 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr7 19530881 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr7 28508474 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr7 28508475 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3227-S Chr7 8585877 8585877 0 0 Insertion 1 upstream_gene_variant HET FN3227-S Chr7 9371450 G-A 0 0 Single Base Substitution 0 INTRON HET FN3227-S Chr8 20902442 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN3227-S Chr8 24077241 Chr4 20494294 0 Translocation 0 FN3227-S Chr8 25364205 25365161 0 0 Inversion 956 FN3227-S Chr8 7447113 7447113 0 0 Insertion 1 upstream_gene_variant HET FN3227-S Chr8 9528777 9528778 0 0 Deletion 1 downstream_gene_variant HET FN3227-S Chr9 13431388 13431396 0 0 Deletion 8 INTERGENIC HOMO FN3227-S Chr9 2835769 2835770 0 0 Deletion 1 intergenic_region HET FN3227-S Chr9 3501268 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3227-S Chr9 836282 C-T 0 0 Single Base Substitution 0 INTERGENIC HET