FN3228-S Chr1 10016629 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr1 10810839 10810840 0 0 Deletion 1 INTERGENIC HET FN3228-S Chr1 1430159 1430163 0 0 Deletion 4 INTERGENIC HOMO FN3228-S Chr1 20424456 20424462 0 0 Deletion 6 downstream_gene_variant HET FN3228-S Chr1 20816568 20816568 0 0 Insertion 2 INTERGENIC HET FN3228-S Chr1 2999270 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3228-S Chr1 35459776 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr1 40679374 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr1 8469463 8469483 0 0 Deletion 20 downstream_gene_variant HET FN3228-S Chr10 10946337 G-T 0 0 Single Base Substitution 0 INTRON HET FN3228-S Chr10 8355110 8355113 0 0 Deletion 3 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os10g16770 retrotransposon, putative, centromere-specific FN3228-S Chr10 9231320 C-A 0 0 Single Base Substitution 0 INTRON HET FN3228-S Chr11 1205572 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3228-S Chr11 16020044 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr11 16205927 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3228-S Chr11 20063236 20063238 0 0 Deletion 2 upstream_gene_variant HET FN3228-S Chr11 20955601 C-T 0 0 Single Base Substitution 0 INTRON HET FN3228-S Chr11 21372520 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3228-S Chr11 21372521 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3228-S Chr11 21372533 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3228-S Chr11 27072233 27072234 0 0 Deletion 1 upstream_gene_variant HET FN3228-S Chr11 8265186 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr11 9903142 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr11 9903143 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr12 10034894 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr12 10448829 Chr7 25514893 0 Translocation 0 FN3228-S Chr12 13705813 G-A 0 0 Single Base Substitution 0 INTRON HET FN3228-S Chr12 15119303 Chr8 12191012 0 Translocation 0 FN3228-S Chr12 17142796 17142796 0 0 Insertion 1 upstream_gene_variant HET FN3228-S Chr12 17497073 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g29450 retrotransposon protein, putative, LINE subclass, expressed FN3228-S Chr12 19477213 C-T 0 0 Single Base Substitution 0 INTRON HET FN3228-S Chr12 2137239 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr12 4830377 4830379 0 0 Deletion 2 INTERGENIC HET FN3228-S Chr2 13261358 Chr1 42763711 0 Translocation 0 FN3228-S Chr2 16698134 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr2 2359559 2359560 0 0 Deletion 1 downstream_gene_variant HET FN3228-S Chr2 26725779 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr2 4811690 G-A 0 0 Single Base Substitution 0 INTRON HET FN3228-S Chr2 8075244 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr3 13184999 13185011 0 0 Deletion 12 INTERGENIC HET FN3228-S Chr3 3337615 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr3 33879838 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3228-S Chr3 7667855 7667856 0 0 Deletion 1 INTERGENIC HOMO FN3228-S Chr3 7782174 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr3 8340303 8340379 0 0 Deletion 76 splice_acceptor_variant&inframe_deletion&splice_region_variant&intron_variant HET LOC_Os03g15250 lectin-like receptor kinase, putative, expressed FN3228-S Chr4 10997482 10997482 0 0 Insertion 1 upstream_gene_variant HET FN3228-S Chr4 12767969 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr4 24572535 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr4 27967253 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g47100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3228-S Chr4 6012452 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr4 8716368 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g16080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3228-S Chr4 9330033 9330033 0 0 Insertion 51 upstream_gene_variant HET FN3228-S Chr5 10094283 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g17570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3228-S Chr5 11345328 11345328 0 0 Insertion 1 downstream_gene_variant HET FN3228-S Chr5 11964346 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3228-S Chr5 14397987 14397995 0 0 Deletion 8 FRAME_SHIFT HET LOC_Os05g24840 retrotransposon protein, putative, unclassified, expressed FN3228-S Chr5 18876491 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3228-S Chr5 26461044 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr6 19480050 19480051 0 0 Deletion 1 downstream_gene_variant HET FN3228-S Chr6 22253964 22253965 0 0 Deletion 1 upstream_gene_variant HET FN3228-S Chr6 30381774 30381777 0 0 Deletion 3 INTERGENIC HOMO FN3228-S Chr6 6684760 A-T 0 0 Single Base Substitution 0 INTRON HET FN3228-S Chr6 7668628 T-A 0 0 Single Base Substitution 0 INTRON HET FN3228-S Chr6 8045661 8045661 0 0 Insertion 1 upstream_gene_variant HET FN3228-S Chr6 8536355 8536356 0 0 Deletion 1 upstream_gene_variant HET FN3228-S Chr7 15136860 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3228-S Chr7 19213121 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g32310 retrotransposon protein, putative, unclassified, expressed FN3228-S Chr7 19345384 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr7 19395001 19415000 0 0 Deletion 19999 LOC_Os07g32560 ATP-dependent protease, putative, expressed FN3228-S Chr7 19395001 19415000 0 0 Deletion 19999 LOC_Os07g32570 OsAPRL1 adenosine 5'-phosphosulfate reductase-like OsAPRL1, expressed FN3228-S Chr7 19395001 19415000 0 0 Deletion 19999 LOC_Os07g36340 OsFBX246 - F-box domain containing protein, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38400 transporter family protein, putative, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38410 YABBY domain containing protein, putative, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38420 pre-mRNA-splicing factor, putative, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38430 WD domain, G-beta repeat domain containing protein, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38440 uncharacterized 50.6 kDa protein in the 5region of gyrA and gyrB, putative, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38450 retrotransposon protein, putative, unclassified, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38460 expressed protein FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38470 expressed protein FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38480 expressed protein FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38490 GDP-fucose protein-O-fucosyltransferase 2, putative, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38500 retrotransposon protein, putative, unclassified, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38510 retrotransposon protein, putative, unclassified, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38520 retrotransposon protein, putative, Ty3-gypsy subclass FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38530 STE_PAK_Ste20_Slob_Wnk.4 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38540 40S ribosomal protein S13, putative, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38550 expressed protein FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38560 adenylyl-sulfate kinase, putative, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38570 expressed protein FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38580 zinc finger family protein, putative, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38590 carboxyl-terminal peptidase, putative, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38600 REX1 DNA Repair family protein, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g38610 UAA transporter family domain containing protein, expressed FN3228-S Chr7 23075001 23191000 0 0 Deletion 115999 LOC_Os07g47550 glucosyltransferase, putative, expressed FN3228-S Chr7 7013246 7013256 0 0 Deletion 10 downstream_gene_variant HET FN3228-S Chr8 10085791 10085799 0 0 Deletion 8 INTRON HET FN3228-S Chr8 12347053 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr8 14590229 Chr3 9391830 0 Translocation 0 FN3228-S Chr8 1805736 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3228-S Chr8 22283208 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3228-S Chr8 24322448 Chr4 7832127 0 Translocation 0 FN3228-S Chr8 24322462 Chr4 7831862 0 Translocation 0 FN3228-S Chr8 4603985 Chr1 12053283 0 Translocation 0 FN3228-S Chr8 4604015 Chr2 15824153 0 Translocation 0 LOC_Os02g26940 vegetative storage protein, putative, expressed FN3228-S Chr8 4604015 Chr7 23076460 0 Translocation 0 LOC_Os07g38390 chalcone isomerase, putative, expressed FN3228-S Chr8 6378823 6378824 0 0 Deletion 1 upstream_gene_variant HET FN3228-S Chr8 7339095 Chr7 23192091 0 Translocation 0 LOC_Os08g12430 VERNALIZATION-INSENSITIVE, putative, expressed FN3228-S Chr8 7339097 Chr1 12054429 0 Translocation 0 LOC_Os08g12430 VERNALIZATION-INSENSITIVE, putative, expressed FN3228-S Chr9 4781242 C-T 0 0 Single Base Substitution 0 INTERGENIC HET