FN3231-S Chr1 10767261 10767261 0 0 Insertion 12 intergenic_region HET FN3231-S Chr1 12684453 12684453 0 0 Insertion 10 upstream_gene_variant HET FN3231-S Chr1 16770149 16770150 0 0 Deletion 1 downstream_gene_variant HET FN3231-S Chr1 34156562 C-A 0 0 Single Base Substitution 0 INTRON HET FN3231-S Chr10 274078 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr10 8921275 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3231-S Chr11 11340120 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr11 13254646 13254646 0 0 Insertion 1 upstream_gene_variant HET FN3231-S Chr11 15722920 Chr9 6881099 0 Translocation 0 FN3231-S Chr11 16728407 16728409 0 0 Deletion 2 INTERGENIC HET FN3231-S Chr11 18955921 18955923 0 0 Deletion 2 intergenic_region HET FN3231-S Chr11 19930910 Chr8 19933685 0 Translocation 0 FN3231-S Chr11 22394737 22394748 0 0 Deletion 11 INTERGENIC HOMO FN3231-S Chr11 3594075 G-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os11g07190 expressed protein FN3231-S Chr12 12606021 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3231-S Chr12 12606022 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3231-S Chr12 12606028 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3231-S Chr12 1922988 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g04520 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed FN3231-S Chr12 24559089 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr12 27050796 Chr7 5814243 0 Translocation 0 FN3231-S Chr2 11324400 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr2 32381424 32381427 0 0 Deletion 3 CODON_DELETION HET LOC_Os02g52950 expressed protein FN3231-S Chr2 542917 542927 0 0 Deletion 10 INTRON HOMO FN3231-S Chr3 16370636 16370644 0 0 Deletion 8 INTERGENIC HOMO FN3231-S Chr3 17533828 17533828 0 0 Insertion 14 downstream_gene_variant HET FN3231-S Chr3 18702701 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3231-S Chr3 20738994 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3231-S Chr3 20738995 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3231-S Chr3 20744837 20744840 0 0 Deletion 3 INTRON HOMO FN3231-S Chr3 20744978 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3231-S Chr3 20744979 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3231-S Chr3 20744980 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN3231-S Chr3 21650623 21650624 0 0 Deletion 1 INTRON HOMO FN3231-S Chr3 27302966 27302966 0 0 Insertion 2 UTR_5_PRIME HET FN3231-S Chr3 943727 943728 0 0 Deletion 1 upstream_gene_variant HET FN3231-S Chr4 11603350 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr4 17707440 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr4 19315924 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr4 4380376 4380381 0 0 Deletion 5 intergenic_region HET FN3231-S Chr4 9760830 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr5 25366952 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr5 29648206 29648206 0 0 Insertion 22 intergenic_region HET FN3231-S Chr6 17396181 17396195 0 0 Deletion 14 INTRON HET FN3231-S Chr6 4657364 Chr2 31533732 0 Translocation 0 LOC_Os02g51490 methyltransferase, putative, expressed FN3231-S Chr6 4657683 Chr2 31533746 0 Translocation 0 LOC_Os02g51490 methyltransferase, putative, expressed FN3231-S Chr7 15549621 Chr6 10850026 0 Translocation 0 LOC_Os06g19080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3231-S Chr7 17588446 17588499 0 0 Deletion 53 frameshift_variant HET LOC_Os07g29880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3231-S Chr7 23615209 Chr1 31062108 0 Translocation 0 FN3231-S Chr7 23615319 Chr1 31062102 0 Translocation 0 FN3231-S Chr7 23717957 T-A 0 0 Single Base Substitution 0 INTRON HET FN3231-S Chr7 25473574 25473582 0 0 Deletion 8 INTERGENIC HET FN3231-S Chr7 7002006 7002337 0 0 Inversion 331 FN3231-S Chr8 17025537 17025537 0 0 Insertion 2 downstream_gene_variant HET FN3231-S Chr8 23305397 23305398 0 0 Deletion 1 upstream_gene_variant HET FN3231-S Chr8 25999665 25999679 0 0 Deletion 14 FRAME_SHIFT HET LOC_Os08g41160 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3231-S Chr8 2626572 2626574 0 0 Deletion 2 INTERGENIC HET FN3231-S Chr8 9036664 9036699 0 0 Deletion 35 INTERGENIC HET FN3231-S Chr9 13520400 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3231-S Chr9 15455822 T-A 0 0 Single Base Substitution 0 START_GAINED HET FN3231-S Chr9 18270963 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3231-S Chr9 1883987 G-T 0 0 Single Base Substitution 0 INTERGENIC HET