FN3233-S Chr1 14714491 14714491 0 0 Insertion 5 upstream_gene_variant HET FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26250 expressed protein FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26270 OsWAK7 - OsWAK receptor-like protein kinase, expressed FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26280 OsWAK8 - OsWAK receptor-like protein kinase, expressed FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26290 expressed protein FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26300 OsWAK9 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26310 wall-associated kinase-like 2, putative, expressed FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26320 ZmEBE-1 protein, putative, expressed FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26330 retrotransposon protein, putative, unclassified FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26340 dirigent, putative FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26350 retrotransposon protein, putative, unclassified, expressed FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26370 expressed protein FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g26390 TKL_IRAK_DUF26-lh.1 - DUF26 kinases have homology to DUF26 containing loci, expressed FN3233-S Chr1 14876001 14973000 0 0 Deletion 96999 LOC_Os01g28740 transposon protein, putative, unclassified, expressed FN3233-S Chr1 19343132 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr1 26965292 26965292 0 0 Insertion 1 frameshift_variant HET LOC_Os01g47170 retrotransposon protein, putative, unclassified, expressed FN3233-S Chr1 32744789 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr1 37205876 37205877 0 0 Deletion 1 downstream_gene_variant HET FN3233-S Chr1 38219639 A-C 0 0 Single Base Substitution 0 INTRON HET FN3233-S Chr1 472599 472600 0 0 Deletion 1 downstream_gene_variant HET FN3233-S Chr10 17105281 17105282 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os10g32649 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3233-S Chr10 17937363 17937365 0 0 Deletion 2 INTERGENIC HET FN3233-S Chr10 19293073 19293073 0 0 Insertion 22 upstream_gene_variant HET FN3233-S Chr10 20207054 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr10 22947207 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr10 8646345 8646345 0 0 Insertion 1 upstream_gene_variant HET FN3233-S Chr11 1178573 1178593 0 0 Deletion 20 INTERGENIC HET FN3233-S Chr11 13568674 13568674 0 0 Insertion 1 downstream_gene_variant HET FN3233-S Chr11 16297962 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr11 16622564 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr11 17281525 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3233-S Chr11 17887524 17887534 0 0 Deletion 10 INTERGENIC HET FN3233-S Chr11 18673792 18673792 0 0 Insertion 3 INTERGENIC HET FN3233-S Chr11 24974232 24974233 0 0 Deletion 1 INTRON HET FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01220 expressed protein FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01230 expressed protein FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01240 mitochondrial substrate carrier family protein, putative, expressed FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01250 csAtPR5, putative, expressed FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01260 protein transport protein Sec61 subunit beta, putative, expressed FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01270 transposon protein, putative, unclassified FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01280 expressed protein FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01290 ulp1 protease family protein, putative, expressed FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01300 expressed protein FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01310 expressed protein FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01350 csAtPR5, putative, expressed FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01355 expressed protein FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01360 expressed protein FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g01370 fatty acid desaturase, putative, expressed FN3233-S Chr12 123001 227000 0 0 Deletion 103999 LOC_Os12g06980 SAP domain containing protein, expressed FN3233-S Chr12 15993669 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr12 17396128 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr12 18865476 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr12 215158 Chr11 188773 0 Translocation 0 FN3233-S Chr12 222206 Chr10 11161965 0 Translocation 0 FN3233-S Chr12 22917636 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr12 23279438 23279438 0 0 Insertion 18 upstream_gene_variant HET FN3233-S Chr12 27403562 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr12 3133406 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3233-S Chr12 9382108 9382108 0 0 Insertion 41 upstream_gene_variant HET FN3233-S Chr2 13386292 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g22410 retrotransposon protein, putative, unclassified, expressed FN3233-S Chr2 14785123 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr2 16200595 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr2 20192699 20192700 0 0 Deletion 1 INTERGENIC HOMO FN3233-S Chr2 20221587 20221587 0 0 Insertion 1 INTRON HOMO FN3233-S Chr2 21351643 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr2 27694813 27694814 0 0 Deletion 1 INTERGENIC HOMO FN3233-S Chr2 28646933 28646933 0 0 Insertion 1 INTERGENIC HOMO FN3233-S Chr2 778401 778402 0 0 Deletion 1 INTERGENIC HET FN3233-S Chr2 8545924 8545925 0 0 Deletion 1 upstream_gene_variant HET FN3233-S Chr3 10675186 10675188 0 0 Deletion 2 INTERGENIC HOMO FN3233-S Chr3 14364836 14364836 0 0 Insertion 4 intron_variant HET FN3233-S Chr3 14934649 G-C 0 0 Single Base Substitution 0 INTRON HET FN3233-S Chr3 17761966 17761969 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os03g31190 retrotransposon protein, putative, Ty1-copia subclass FN3233-S Chr3 18709598 Chr1 31237474 0 Translocation 0 LOC_Os01g54290 retrotransposon protein, putative, unclassified, expressed FN3233-S Chr3 18709620 Chr1 31217068 0 Translocation 0 FN3233-S Chr3 18727295 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr3 23789643 Chr2 24446678 0 Translocation 0 LOC_Os02g40360 retrotransposon protein, putative, unclassified, expressed FN3233-S Chr3 23789643 Chr2 24446678 0 Translocation 0 LOC_Os03g42730 expressed protein FN3233-S Chr3 25248173 25248174 0 0 Deletion 1 upstream_gene_variant HET FN3233-S Chr3 36133204 A-T 0 0 Single Base Substitution 0 INTRON HET FN3233-S Chr4 1249991 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3233-S Chr4 1696079 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g03790 retrotransposon protein, putative, unclassified, expressed FN3233-S Chr4 20273029 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr4 31056708 31056728 0 0 Deletion 20 INTERGENIC HOMO FN3233-S Chr4 31262213 31262213 0 0 Insertion 2 INTRON HET FN3233-S Chr4 31492677 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr4 319918 319957 0 0 Deletion 39 upstream_gene_variant HET FN3233-S Chr4 7757553 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr4 9780924 9841553 0 0 Inversion 60629 FN3233-S Chr5 10258844 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3233-S Chr5 1978387 1978395 0 0 Deletion 8 INTERGENIC HET FN3233-S Chr5 4452303 4452315 0 0 Deletion 12 downstream_gene_variant HET FN3233-S Chr5 6357248 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr5 8787446 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3233-S Chr5 8825879 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3233-S Chr6 21147935 21147939 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os06g36140 retrotransposon protein, putative, unclassified, expressed FN3233-S Chr6 21230561 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3233-S Chr6 23192203 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3233-S Chr6 23792838 23792840 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os06g40000 retrotransposon protein, putative, unclassified, expressed FN3233-S Chr6 29311666 29311666 0 0 Insertion 31 downstream_gene_variant HET FN3233-S Chr7 12877750 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr7 14145142 14145142 0 0 Insertion 4 downstream_gene_variant HET FN3233-S Chr7 18174124 18174125 0 0 Deletion 1 intron_variant HET FN3233-S Chr7 19676771 19676771 0 0 Insertion 1 downstream_gene_variant HET FN3233-S Chr7 26760017 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3233-S Chr7 6195094 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr8 15630641 15630800 0 0 Inversion 159 LOC_Os08g25690 expressed protein FN3233-S Chr8 18005193 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3233-S Chr8 18831129 18831131 0 0 Deletion 2 INTERGENIC HOMO FN3233-S Chr8 19443308 19446737 0 0 Inversion 3429 LOC_Os08g31440 expressed protein FN3233-S Chr8 19443316 19446746 0 0 Inversion 3430 LOC_Os08g31440 expressed protein FN3233-S Chr8 23670129 G-A 0 0 Single Base Substitution 0 INTRON HET FN3233-S Chr8 27102329 27102338 0 0 Deletion 9 INTERGENIC HOMO FN3233-S Chr8 4537433 4537434 0 0 Deletion 1 INTERGENIC HOMO FN3233-S Chr8 4795229 4795230 0 0 Deletion 1 frameshift_variant HET LOC_Os08g08350 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3233-S Chr8 7866051 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr9 18233362 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3233-S Chr9 18353404 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3233-S Chr9 22554318 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3233-S Chr9 3186099 3186099 0 0 Insertion 12 downstream_gene_variant HET FN3233-S Chr9 618078 618084 0 0 Deletion 6 INTERGENIC HET FN3233-S Chr9 7436164 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3233-S Chr9 7458170 7458170 0 0 Insertion 4 upstream_gene_variant HET