FN3234-S Chr1 11667817 11667910 0 0 Deletion 93 upstream_gene_variant HET FN3234-S Chr1 12715900 12715901 0 0 Deletion 1 intergenic_region HET FN3234-S Chr1 16890996 16890996 0 0 Insertion 1 downstream_gene_variant HET FN3234-S Chr1 17526113 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3234-S Chr1 24943590 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3234-S Chr1 29640472 29640473 0 0 Deletion 1 INTRON HOMO FN3234-S Chr1 34345889 34345891 0 0 Deletion 2 upstream_gene_variant HET FN3234-S Chr1 36614284 36614288 0 0 Deletion 4 upstream_gene_variant HET FN3234-S Chr1 40451040 40451246 0 0 Inversion 206 FN3234-S Chr1 487745 487747 0 0 Deletion 2 downstream_gene_variant HET FN3234-S Chr10 17285826 17285849 0 0 Deletion 23 frameshift_variant HET LOC_Os10g33010 retrotransposon protein, putative, unclassified, expressed FN3234-S Chr10 3606691 3606691 0 0 Insertion 6 downstream_gene_variant HET FN3234-S Chr10 5005559 5005559 0 0 Insertion 23 upstream_gene_variant HET FN3234-S Chr10 5081996 5081997 0 0 Deletion 1 upstream_gene_variant HET FN3234-S Chr11 15876750 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3234-S Chr11 16248135 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr11 18632306 18632306 0 0 Insertion 1 frameshift_variant HET LOC_Os11g31760 transposon protein, putative, unclassified, expressed FN3234-S Chr11 25990442 C-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os11g43080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3234-S Chr11 26117339 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3234-S Chr11 27467160 27467168 0 0 Deletion 8 INTERGENIC HOMO FN3234-S Chr11 3066293 3066295 0 0 Deletion 2 upstream_gene_variant HET FN3234-S Chr11 3244590 Chr8 24662083 0 Translocation 0 FN3234-S Chr11 5093957 5093957 0 0 Insertion 52 downstream_gene_variant HET FN3234-S Chr11 5391782 5391782 0 0 Insertion 40 intergenic_region HET FN3234-S Chr11 756688 756689 0 0 Deletion 1 downstream_gene_variant HET FN3234-S Chr11 8196780 8196780 0 0 Insertion 1 downstream_gene_variant HET FN3234-S Chr12 10518687 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr12 11648761 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3234-S Chr12 13483915 Chr6 4522761 0 Translocation 0 FN3234-S Chr12 13512466 Chr2 18912678 0 Translocation 0 LOC_Os12g23780 expressed protein FN3234-S Chr12 15609997 15610006 0 0 Deletion 9 upstream_gene_variant HET FN3234-S Chr12 21964312 21964312 0 0 Insertion 1 downstream_gene_variant HET FN3234-S Chr12 25788420 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr12 8548657 8548657 0 0 Insertion 2 downstream_gene_variant HET FN3234-S Chr2 12839041 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr2 12839042 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr2 13259436 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr2 19217433 19217462 0 0 Deletion 29 upstream_gene_variant HET FN3234-S Chr2 21744348 21744353 0 0 Deletion 5 upstream_gene_variant HET FN3234-S Chr2 25656396 25656397 0 0 Deletion 1 upstream_gene_variant HET FN3234-S Chr2 30406783 30406784 0 0 Deletion 1 upstream_gene_variant HET FN3234-S Chr2 31370667 31370667 0 0 Insertion 1 intergenic_region HET FN3234-S Chr2 32060236 32060237 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os02g52380 DUF1645 domain containing protein, putative, expressed FN3234-S Chr2 68178 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr3 10637213 Chr2 15315086 0 Translocation 0 FN3234-S Chr3 11401979 11401980 0 0 Deletion 1 upstream_gene_variant HET FN3234-S Chr3 18536414 A-T 0 0 Single Base Substitution 0 INTRON HET FN3234-S Chr3 18954854 18954857 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os03g33130 retrotransposon protein, putative, Ty3-gypsy subclass FN3234-S Chr3 19577286 19577286 0 0 Insertion 1 intergenic_region HET FN3234-S Chr3 20533415 20533415 0 0 Insertion 3 downstream_gene_variant HET FN3234-S Chr3 21553602 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr3 22400805 Chr2 18238533 0 Translocation 0 FN3234-S Chr3 28312465 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr3 28983778 28983779 0 0 Deletion 1 downstream_gene_variant HET FN3234-S Chr3 36001143 36001143 0 0 Insertion 2 INTERGENIC HET FN3234-S Chr3 8979672 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr3 9472945 9472946 0 0 Deletion 1 intergenic_region HET FN3234-S Chr4 10085542 10085542 0 0 Insertion 1 intron_variant HET FN3234-S Chr4 14547660 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3234-S Chr4 18813966 18813966 0 0 Insertion 1 intergenic_region HET FN3234-S Chr4 23025362 C-G 0 0 Single Base Substitution 0 INTRON HET FN3234-S Chr4 23681220 23681220 0 0 Insertion 1 upstream_gene_variant HET FN3234-S Chr4 24713489 24713490 0 0 Deletion 1 frameshift_variant HET LOC_Os04g41690 transposon protein, putative, unclassified, expressed FN3234-S Chr4 27134122 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN3234-S Chr4 27134123 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3234-S Chr4 33811629 G-C 0 0 Single Base Substitution 0 INTRON HET FN3234-S Chr4 34560975 34560975 0 0 Insertion 1 upstream_gene_variant HET FN3234-S Chr4 5815354 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr4 9854056 9854133 0 0 Deletion 77 frameshift_variant HET LOC_Os04g17920 retrotransposon protein, putative, unclassified, expressed FN3234-S Chr5 12928235 Chr2 474617 0 Translocation 0 FN3234-S Chr5 1336836 1336836 0 0 Insertion 1 upstream_gene_variant HET FN3234-S Chr5 14238696 14238697 0 0 Deletion 1 upstream_gene_variant HET FN3234-S Chr5 21990366 21990366 0 0 Insertion 2 frameshift_variant HET LOC_Os05g37580 retrotransposon protein, putative, unclassified, expressed FN3234-S Chr5 24952707 24952708 0 0 Deletion 1 downstream_gene_variant HET FN3234-S Chr5 4465676 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g08190 retrotransposon protein, putative, unclassified FN3234-S Chr5 5453462 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr5 5668809 5668812 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os05g10400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3234-S Chr5 5791120 5791120 0 0 Insertion 18 disruptive_inframe_insertion HET LOC_Os05g10625 expressed protein FN3234-S Chr5 7247566 7247602 0 0 Deletion 36 upstream_gene_variant HET FN3234-S Chr5 7826087 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr6 10857836 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3234-S Chr6 112508 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3234-S Chr6 19679791 19679794 0 0 Deletion 3 inframe_deletion HET LOC_Os06g33820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3234-S Chr6 20268294 Chr2 10257940 0 Translocation 0 FN3234-S Chr6 21950536 Chr1 13413514 0 Translocation 0 FN3234-S Chr6 25585719 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3234-S Chr6 29270737 29270737 0 0 Insertion 1 upstream_gene_variant HET FN3234-S Chr6 29613748 29613749 0 0 Deletion 1 upstream_gene_variant HET FN3234-S Chr6 5459478 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3234-S Chr7 11227683 11227684 0 0 Deletion 1 3_prime_UTR_variant HET FN3234-S Chr7 11613061 11613103 0 0 Deletion 42 upstream_gene_variant HET FN3234-S Chr7 18142127 18142128 0 0 Deletion 1 frameshift_variant HET LOC_Os07g30660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3234-S Chr7 19003107 19003147 0 0 Deletion 40 upstream_gene_variant HET FN3234-S Chr7 21957725 21957726 0 0 Deletion 1 downstream_gene_variant HET FN3234-S Chr7 23015992 23015994 0 0 Deletion 2 upstream_gene_variant HET FN3234-S Chr7 23447304 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr7 28814589 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3234-S Chr7 29061348 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3234-S Chr8 11170988 11170988 0 0 Insertion 1 upstream_gene_variant HET FN3234-S Chr8 12468710 12468710 0 0 Insertion 60 downstream_gene_variant HET FN3234-S Chr8 12663826 12663842 0 0 Deletion 16 frameshift_variant HET LOC_Os08g21210 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3234-S Chr8 14927379 14927509 0 0 Deletion 130 frameshift_variant HET LOC_Os08g24700 expressed protein FN3234-S Chr8 15637337 15637339 0 0 Deletion 2 INTERGENIC HOMO FN3234-S Chr8 16171403 16171403 0 0 Insertion 1 downstream_gene_variant HET FN3234-S Chr8 2309744 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3234-S Chr8 3016138 3016140 0 0 Deletion 2 5_prime_UTR_variant HET FN3234-S Chr8 407645 407646 0 0 Deletion 1 intergenic_region HET FN3234-S Chr8 4252392 4252457 0 0 Deletion 65 downstream_gene_variant HET FN3234-S Chr8 6937947 6937950 0 0 Deletion 3 upstream_gene_variant HET FN3234-S Chr8 8605795 8605816 0 0 Deletion 21 upstream_gene_variant HET FN3234-S Chr9 12188785 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr9 16680650 16680650 0 0 Insertion 16 upstream_gene_variant HET FN3234-S Chr9 17433712 Chr6 21195750 0 Translocation 0 FN3234-S Chr9 17445824 Chr6 21196272 0 Translocation 0 FN3234-S Chr9 17445840 17732482 0 0 Inversion 286642 LOC_Os09g29160 expressed protein FN3234-S Chr9 17628883 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g29000 retrotransposon protein, putative, Ty3-gypsy subclass FN3234-S Chr9 17628885 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g29000 retrotransposon protein, putative, Ty3-gypsy subclass FN3234-S Chr9 22059074 22059081 0 0 Deletion 7 INTERGENIC HOMO FN3234-S Chr9 2376786 2376786 0 0 Insertion 1 intron_variant HET FN3234-S Chr9 4904724 4904724 0 0 Insertion 1 upstream_gene_variant HET FN3234-S Chr9 6321943 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3234-S Chr9 85398 85398 0 0 Insertion 1 downstream_gene_variant HET FN3234-S Chr9 9706659 9706660 0 0 Deletion 1 frameshift_variant HET LOC_Os09g15880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3234-S Chr9 9711261 9711261 0 0 Insertion 1 upstream_gene_variant HET