FN3235-S Chr1 30188600 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3235-S Chr1 30847632 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3235-S Chr1 33415855 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3235-S Chr1 3392624 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g07180 expressed protein FN3235-S Chr1 40722238 40722345 0 0 Inversion 107 FN3235-S Chr1 8452656 8452658 0 0 Deletion 2 upstream_gene_variant HET FN3235-S Chr10 11456298 11456359 0 0 Deletion 61 upstream_gene_variant HET FN3235-S Chr10 1227152 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr10 12388005 Chr1 18490988 0 Translocation 0 FN3235-S Chr10 15670232 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3235-S Chr10 22012756 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3235-S Chr10 2445796 2445796 0 0 Insertion 64 5_prime_UTR_variant HET FN3235-S Chr10 2579147 2579148 0 0 Deletion 1 intergenic_region HET FN3235-S Chr10 5028681 C-T 0 0 Single Base Substitution 0 INTRON HET FN3235-S Chr10 5616093 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3235-S Chr11 13435196 13435196 0 0 Insertion 42 upstream_gene_variant HET FN3235-S Chr11 15180057 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3235-S Chr11 15532912 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g26990 expressed protein FN3235-S Chr11 15997905 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr11 18742957 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g31890 NLI interacting factor-like phosphatase, putative, expressed FN3235-S Chr11 21347402 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3235-S Chr11 21580976 Chr9 8955214 0 Translocation 0 FN3235-S Chr11 24762378 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3235-S Chr11 8657552 8657552 0 0 Insertion 1 downstream_gene_variant HET FN3235-S Chr12 11148699 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g19200 transposon protein, putative, CACTA, En/Spm sub-class FN3235-S Chr12 12038230 12038230 0 0 Insertion 1 intergenic_region HET FN3235-S Chr12 17059018 17059026 0 0 Deletion 8 upstream_gene_variant HET FN3235-S Chr12 19883127 19883129 0 0 Deletion 2 INTERGENIC HET FN3235-S Chr12 20567780 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3235-S Chr12 2290420 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g05180 avr9/Cf-9 rapidly elicited protein, putative, expressed FN3235-S Chr12 23259866 23259867 0 0 Deletion 1 upstream_gene_variant HET FN3235-S Chr12 262349 Chr6 14440085 0 Translocation 0 FN3235-S Chr12 6029211 Chr3 15242979 0 Translocation 0 LOC_Os12g11190 retrotransposon protein, putative, Ty3-gypsy subclass FN3235-S Chr12 7490000 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr12 9117337 9117339 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os12g16000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3235-S Chr2 11090563 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3235-S Chr2 17595424 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr2 17793853 17793854 0 0 Deletion 1 frameshift_variant HET LOC_Os02g29920 transposon protein, putative, CACTA, En/Spm sub-class FN3235-S Chr2 24934526 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr2 25639394 25639401 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os02g42620 protein kinase, putative, expressed FN3235-S Chr2 9034220 9034220 0 0 Insertion 18 intergenic_region HET FN3235-S Chr3 13381615 13381615 0 0 Insertion 1 upstream_gene_variant HET FN3235-S Chr3 15500283 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr3 16957737 16957764 0 0 Deletion 27 INTERGENIC HOMO FN3235-S Chr3 19362931 19362937 0 0 Deletion 6 upstream_gene_variant HET FN3235-S Chr3 19758922 19758987 0 0 Deletion 65 frameshift_variant HET LOC_Os03g35670 retrotransposon protein, putative, unclassified FN3235-S Chr3 22311001 22321000 0 0 Deletion 9999 LOC_Os03g40160 transposon protein, putative, unclassified, expressed FN3235-S Chr3 23901899 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g42870 hypothetical protein FN3235-S Chr3 24138400 24138400 0 0 Insertion 1 frameshift_variant HET LOC_Os03g43290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3235-S Chr3 33284117 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr3 35942243 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr4 10033036 10042982 0 0 Inversion 9946 LOC_Os04g18150 transposon protein, putative, unclassified FN3235-S Chr4 10033038 10042980 0 0 Inversion 9942 LOC_Os04g18150 transposon protein, putative, unclassified FN3235-S Chr4 1552700 1552700 0 0 Insertion 1 downstream_gene_variant HET FN3235-S Chr4 18161760 18161761 0 0 Deletion 1 intergenic_region HET FN3235-S Chr4 20749713 20749714 0 0 Deletion 1 upstream_gene_variant HET FN3235-S Chr4 2316186 2316187 0 0 Deletion 1 upstream_gene_variant HET FN3235-S Chr4 28883702 28883702 0 0 Insertion 35 upstream_gene_variant HET FN3235-S Chr4 31281608 G-A 0 0 Single Base Substitution 0 INTRON HET FN3235-S Chr4 32081869 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3235-S Chr4 33521124 33521124 0 0 Insertion 83 upstream_gene_variant HET FN3235-S Chr4 7914316 7914316 0 0 Insertion 4 upstream_gene_variant HET FN3235-S Chr4 8961811 Chr1 8614310 0 Translocation 0 FN3235-S Chr4 9475924 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g17280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3235-S Chr5 12974311 12974313 0 0 Deletion 2 upstream_gene_variant HET FN3235-S Chr5 14364472 14364472 0 0 Insertion 72 upstream_gene_variant HET FN3235-S Chr5 14803613 14803616 0 0 Deletion 3 upstream_gene_variant HET FN3235-S Chr5 17036282 17036282 0 0 Insertion 12 intergenic_region HET FN3235-S Chr5 20526001 20563000 0 0 Deletion 36999 LOC_Os05g34620 retrotransposon protein, putative, unclassified, expressed FN3235-S Chr5 20526001 20563000 0 0 Deletion 36999 LOC_Os05g34630 hydrolase, alpha/beta fold family domain containing protein, expressed FN3235-S Chr5 20526001 20563000 0 0 Deletion 36999 LOC_Os05g34640 PHD finger protein, putative, expressed FN3235-S Chr5 20526001 20563000 0 0 Deletion 36999 LOC_Os05g34650 DUF647 domain containing protein, putative, expressed FN3235-S Chr5 20526001 20563000 0 0 Deletion 36999 LOC_Os05g34655 expressed protein FN3235-S Chr5 20526001 20563000 0 0 Deletion 36999 LOC_Os05g34790 GYF domain containing protein, putative, expressed FN3235-S Chr5 20526178 20753238 0 0 Inversion 227060 FN3235-S Chr5 20562376 20753247 0 0 Inversion 190871 FN3235-S Chr5 24246940 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g41410 retrotransposon protein, putative, unclassified, expressed FN3235-S Chr5 29179565 29179565 0 0 Insertion 1 upstream_gene_variant HET FN3235-S Chr5 5141062 T-G 0 0 Single Base Substitution 0 INTRON HET FN3235-S Chr5 6127134 6127134 0 0 Insertion 1 intron_variant HET FN3235-S Chr5 7280007 G-A 0 0 Single Base Substitution 0 INTRON HET FN3235-S Chr5 7361082 Chr1 31164154 0 Translocation 0 FN3235-S Chr5 9660416 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr6 2421030 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3235-S Chr6 2940483 A-G 0 0 Single Base Substitution 0 INTRON HET FN3235-S Chr6 5380110 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr6 79206 79559 0 0 Deletion 353 intergenic_region HET FN3235-S Chr6 9308320 9308320 0 0 Insertion 1 upstream_gene_variant HET FN3235-S Chr7 12634256 Chr1 34701303 0 Translocation 0 FN3235-S Chr7 12634260 Chr1 34701297 0 Translocation 0 FN3235-S Chr7 23258848 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3235-S Chr7 26185772 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr7 5187222 5187223 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os07g09730 expressed protein FN3235-S Chr7 5926643 5926644 0 0 Deletion 1 upstream_gene_variant HET FN3235-S Chr7 6543809 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3235-S Chr7 9057510 9057510 0 0 Insertion 4 frameshift_variant HET LOC_Os07g15620 retrotransposon protein, putative, unclassified, expressed FN3235-S Chr8 16212030 16212030 0 0 Insertion 2 INTERGENIC HET FN3235-S Chr8 16599949 16599949 0 0 Insertion 72 downstream_gene_variant HET FN3235-S Chr8 17293658 17293658 0 0 Insertion 4 upstream_gene_variant HET FN3235-S Chr8 20653778 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3235-S Chr8 3305001 3343000 0 0 Deletion 37999 LOC_Os08g06070 ELF7, putative, expressed FN3235-S Chr8 3305001 3343000 0 0 Deletion 37999 LOC_Os08g06090 zinc finger, C3HC4 type domain containing protein, expressed FN3235-S Chr8 3305001 3343000 0 0 Deletion 37999 LOC_Os08g06100 O-methyltransferase, putative, expressed FN3235-S Chr8 3305001 3343000 0 0 Deletion 37999 LOC_Os08g12370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3235-S Chr8 3346528 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr8 4436752 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr8 6466393 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr8 6797149 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g11590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3235-S Chr8 8928502 Chr6 17497732 0 Translocation 0 FN3235-S Chr9 15748883 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3235-S Chr9 355205 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g01480 retrotransposon protein, putative, unclassified, expressed