FN3236-S Chr1 11574409 11574409 0 0 Insertion 34 intergenic_region HET FN3236-S Chr1 20999703 20999703 0 0 Insertion 3 downstream_gene_variant HET FN3236-S Chr1 22997213 22997222 0 0 Deletion 9 STOP_GAINED+CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os01g40690 holocarboxylase synthetase, putative, expressed FN3236-S Chr1 23755474 23755493 0 0 Deletion 19 INTERGENIC HOMO FN3236-S Chr1 28801036 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3236-S Chr1 30178142 30178142 0 0 Insertion 28 upstream_gene_variant HET FN3236-S Chr1 35079159 35079160 0 0 Deletion 1 INTERGENIC HET FN3236-S Chr1 36239007 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g62600 laccase precursor protein, putative, expressed FN3236-S Chr1 36757594 36757604 0 0 Deletion 10 UTR_3_PRIME HOMO FN3236-S Chr1 40576884 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3236-S Chr10 10285899 10285919 0 0 Deletion 20 upstream_gene_variant HET FN3236-S Chr10 19844937 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr10 353275 C-G 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr10 7320499 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g13530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3236-S Chr11 13605675 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr11 16562244 16562248 0 0 Deletion 4 upstream_gene_variant HET FN3236-S Chr11 17119974 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g29510 cysteine-rich receptor-like protein kinase 35 precursor, putative, expressed FN3236-S Chr11 19416435 19416435 0 0 Insertion 2 upstream_gene_variant HET FN3236-S Chr11 8060581 8060581 0 0 Insertion 2 INTERGENIC HET FN3236-S Chr11 8689441 8689533 0 0 Deletion 92 upstream_gene_variant HET FN3236-S Chr11 8886060 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr12 14395807 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr12 24725907 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr12 25221568 25221569 0 0 Deletion 1 intron_variant HET FN3236-S Chr12 3341156 G-A 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr12 3995526 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr12 4082646 C-T 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr12 9033574 9033574 0 0 Insertion 1 upstream_gene_variant HET FN3236-S Chr12 9214927 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr2 13193334 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr2 1436970 1436987 0 0 Deletion 17 UTR_3_PRIME HOMO FN3236-S Chr2 14419393 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g24870 retrotransposon protein, putative, Ty3-gypsy subclass FN3236-S Chr2 28995598 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr2 32366555 32366556 0 0 Deletion 1 upstream_gene_variant HET FN3236-S Chr2 35524517 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr2 4142416 4142430 0 0 Deletion 14 INTRON HOMO FN3236-S Chr2 7389595 7389596 0 0 Deletion 1 intron_variant HET FN3236-S Chr3 11436163 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr3 11452284 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr3 13765723 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr3 14570352 14576746 0 0 Inversion 6394 FN3236-S Chr3 14570371 14576747 0 0 Inversion 6376 FN3236-S Chr3 1610549 G-A 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr3 17713352 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr3 23571790 23571791 0 0 Deletion 1 INTRON HET FN3236-S Chr3 8416893 8416918 0 0 Deletion 25 INTRON HOMO FN3236-S Chr3 9949890 9949890 0 0 Insertion 2 INTRON HET FN3236-S Chr4 11739351 11739351 0 0 Insertion 54 upstream_gene_variant HET FN3236-S Chr4 1370481 1370481 0 0 Insertion 1 upstream_gene_variant HET FN3236-S Chr4 1515347 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3236-S Chr4 31328501 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr4 34175159 T-C 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr4 3419458 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g06510 expressed protein FN3236-S Chr4 4579776 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3236-S Chr4 9003268 9003269 0 0 Deletion 1 upstream_gene_variant HET FN3236-S Chr4 9822377 9822378 0 0 Deletion 1 frameshift_variant HET LOC_Os04g17870 retrotransposon protein, putative, unclassified, expressed FN3236-S Chr4 9944530 9944540 0 0 Deletion 10 INTRON HOMO FN3236-S Chr5 10317626 10317626 0 0 Insertion 1 upstream_gene_variant HET FN3236-S Chr5 11296798 C-T 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr5 16969746 A-G 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr5 26883995 26884002 0 0 Deletion 7 INTERGENIC HET FN3236-S Chr5 6786278 6786280 0 0 Deletion 2 INTERGENIC HET FN3236-S Chr5 7281008 7281013 0 0 Deletion 5 INTRON HET FN3236-S Chr5 8739318 8739319 0 0 Deletion 1 upstream_gene_variant HET FN3236-S Chr5 981659 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr6 1107683 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr6 14261124 14261124 0 0 Insertion 5 upstream_gene_variant HET FN3236-S Chr6 17364138 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr6 6348679 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr7 16366001 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr7 17067571 C-T 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr7 180900 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os07g01290 transposon protein, putative, unclassified, expressed FN3236-S Chr7 18336267 A-T 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr7 21020809 21020809 0 0 Insertion 2 upstream_gene_variant HET FN3236-S Chr7 23625332 G-A 0 0 Single Base Substitution 0 INTRON HET FN3236-S Chr7 25275195 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr7 27215960 27215961 0 0 Deletion 1 upstream_gene_variant HET FN3236-S Chr7 4435376 4435376 0 0 Insertion 1 FRAME_SHIFT HET LOC_Os07g08610 retrotransposon protein, putative, unclassified, expressed FN3236-S Chr7 5500910 5500919 0 0 Deletion 9 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os07g10250 DEAD-box ATP-dependent RNA helicase 52B, putative, expressed FN3236-S Chr7 8802657 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr8 10523812 Chr7 8953433 0 Translocation 0 FN3236-S Chr8 11062599 11062600 0 0 Deletion 1 upstream_gene_variant HET FN3236-S Chr8 12977073 12977074 0 0 Deletion 1 upstream_gene_variant HET FN3236-S Chr8 15698227 15698230 0 0 Deletion 3 INTRON HOMO FN3236-S Chr8 16705185 16705186 0 0 Deletion 1 downstream_gene_variant HET FN3236-S Chr8 20285311 20285311 0 0 Insertion 2 3_prime_UTR_variant HET FN3236-S Chr8 20465701 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3236-S Chr8 20465702 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3236-S Chr8 20634590 20634597 0 0 Deletion 7 INTERGENIC HOMO FN3236-S Chr8 20974149 20974175 0 0 Deletion 26 downstream_gene_variant HET FN3236-S Chr8 21020174 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g33660 MYB family transcription factor, putative, expressed FN3236-S Chr8 25701732 25701741 0 0 Deletion 9 INTERGENIC HET FN3236-S Chr8 4211948 4211952 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os08g07500 DUF617 domain containing protein, expressed FN3236-S Chr8 5497384 5497386 0 0 Deletion 2 FRAME_SHIFT+STOP_LOST HET LOC_Os08g09490 retrotransposon protein, putative, unclassified FN3236-S Chr8 6616764 6616765 0 0 Deletion 1 INTERGENIC HET FN3236-S Chr8 6685630 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr8 6823189 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr9 10126944 10126944 0 0 Insertion 24 upstream_gene_variant HET FN3236-S Chr9 12284005 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr9 127577 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g01120 retrotransposon protein, putative, Ty3-gypsy subclass FN3236-S Chr9 15654509 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3236-S Chr9 2271542 2271554 0 0 Deletion 12 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os09g04270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3236-S Chr9 4204580 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3236-S Chr9 5554624 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3236-S Chr9 7786020 7786024 0 0 Deletion 4 INTERGENIC HOMO