FN3239-S Chr1 10794769 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr1 11951290 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr1 21698666 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr1 23923820 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g42234 amino acid permease family protein, putative, expressed FN3239-S Chr1 8859364 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr1 9286736 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr10 18514723 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3239-S Chr10 21837291 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os10g40710 expansin precursor, putative, expressed FN3239-S Chr10 2976088 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr10 3048228 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3239-S Chr11 11276335 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3239-S Chr11 11378557 11378557 0 0 Insertion 2 INTERGENIC HET FN3239-S Chr11 1294037 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr11 18851190 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g31990 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr11 1971218 1971224 0 0 Deletion 6 INTRON HET FN3239-S Chr11 22414001 22441000 0 0 Deletion 26999 LOC_Os11g37850 stripe rust resistance protein Yr10, putative, expressed FN3239-S Chr11 22414001 22441000 0 0 Deletion 26999 LOC_Os11g37860 stripe rust resistance protein Yr10, putative, expressed FN3239-S Chr11 22414001 22441000 0 0 Deletion 26999 LOC_Os11g38430 expressed protein FN3239-S Chr11 23374413 23374419 0 0 Deletion 6 INTERGENIC HOMO FN3239-S Chr11 28252936 28253028 0 0 Deletion 92 splice_donor_variant&disruptive_inframe_deletion&splice_region_variant&intron_variant HET LOC_Os11g47229 expressed protein FN3239-S Chr11 6669226 6669232 0 0 Deletion 6 INTRON HET FN3239-S Chr11 8548583 G-A 0 0 Single Base Substitution 0 INTRON HET FN3239-S Chr11 9402844 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr11 9850541 9850542 0 0 Deletion 1 INTERGENIC HET FN3239-S Chr12 11696181 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr12 15451601 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g26444 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr12 17051560 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr12 25035888 25036241 0 0 Inversion 353 LOC_Os12g40460 zinc finger, C3HC4 type domain containing protein, expressed FN3239-S Chr12 27177689 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr12 599530 599530 0 0 Insertion 2 INTERGENIC HET FN3239-S Chr2 11109211 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g19020 expressed protein FN3239-S Chr2 16288125 16396096 0 0 Inversion 107971 FN3239-S Chr2 17068098 17068098 0 0 Insertion 88 downstream_gene_variant HET FN3239-S Chr2 24709729 24709729 0 0 Insertion 4 intron_variant HET FN3239-S Chr2 25518934 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3239-S Chr2 4630341 A-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3239-S Chr2 5699278 5699278 0 0 Insertion 12 upstream_gene_variant HET FN3239-S Chr2 6652352 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3239-S Chr3 17035966 17035967 0 0 Deletion 1 INTERGENIC HOMO FN3239-S Chr3 22193212 22193214 0 0 Deletion 2 downstream_gene_variant HET FN3239-S Chr3 3300721 3300722 0 0 Deletion 1 downstream_gene_variant HET FN3239-S Chr3 33558093 33558093 0 0 Insertion 4 downstream_gene_variant HET FN3239-S Chr4 12476892 12476892 0 0 Insertion 19 downstream_gene_variant HET FN3239-S Chr4 29134719 Chr2 30717913 0 Translocation 0 FN3239-S Chr4 29134799 Chr2 30717938 0 Translocation 0 FN3239-S Chr4 6171837 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3239-S Chr4 7238958 7238958 0 0 Insertion 6 upstream_gene_variant HET FN3239-S Chr5 10477914 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr5 10546935 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr5 11809259 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3239-S Chr5 21844937 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g37350 hhH-GPD superfamily base excision DNA repair protein, expressed FN3239-S Chr5 21847128 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g37350 hhH-GPD superfamily base excision DNA repair protein, expressed FN3239-S Chr5 24156590 T-C 0 0 Single Base Substitution 0 START_GAINED HOMO FN3239-S Chr5 4371850 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr5 9969334 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr6 15988354 15988356 0 0 Deletion 2 INTERGENIC HET FN3239-S Chr6 18103071 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g31160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3239-S Chr6 18408996 18408996 0 0 Insertion 1 downstream_gene_variant HET FN3239-S Chr6 19679633 19679634 0 0 Deletion 1 frameshift_variant HET LOC_Os06g33820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3239-S Chr6 22522042 22522042 0 0 Insertion 1 upstream_gene_variant HET FN3239-S Chr6 22938351 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr6 28845568 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr6 5390796 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr6 9344762 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr7 12863373 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr7 14561509 15111350 0 0 Inversion 549841 FN3239-S Chr7 14561516 Chr3 5166431 0 Translocation 0 LOC_Os03g10180 expressed protein FN3239-S Chr7 14561679 Chr3 5166434 0 Translocation 0 LOC_Os03g10180 expressed protein FN3239-S Chr7 14565739 15111377 0 0 Inversion 545638 FN3239-S Chr7 16836657 16836657 0 0 Insertion 1 frameshift_variant&stop_gained HET LOC_Os07g28760 transposon protein, putative, unclassified, expressed FN3239-S Chr7 21472781 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3239-S Chr7 22649066 A-G 0 0 Single Base Substitution 0 INTRON HET FN3239-S Chr7 28344376 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g47400 SRC2 protein, putative, expressed FN3239-S Chr7 29375374 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g15970 erythronate-4-phosphate dehydrogenase domain containing protein, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g15980 expressed protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g15990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16010 retrotransposon protein, putative, Ty3-gypsy subclass FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16030 expressed protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16040 erythronate-4-phosphate dehydrogenase domain containing protein, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16054 hypothetical protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16070 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16080 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16090 retrotransposon protein, putative, unclassified FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16100 retrotransposon protein, putative, unclassified FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16110 retrotransposon protein, putative, Ty3-gypsy subclass FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16120 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16130 acetyltransferase, GNAT family, putative, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16140 FAD binding protein, putative, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16150 expressed protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16160 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16170 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16180 hypothetical protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16190 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16210 expressed protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16224 piwi domain containing protein, putative, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16250 retrotransposon protein, putative, unclassified FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16260 expressed protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16270 hypothetical protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16280 retrotransposon, putative, centromere-specific, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16290 retrotransposon protein, putative, unclassified FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16320 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16330 expressed protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16360 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16364 expressed protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16380 expressed protein FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16410 transposon protein, putative, unclassified FN3239-S Chr7 9281001 9616000 0 0 Deletion 334999 LOC_Os07g16480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3239-S Chr7 9373552 9373567 0 0 Deletion 15 upstream_gene_variant HET FN3239-S Chr7 9602252 9602253 0 0 Deletion 1 downstream_gene_variant HET FN3239-S Chr8 14881428 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr8 24311396 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g38400 oligopeptide transporter, putative, expressed FN3239-S Chr8 6159278 6159278 0 0 Insertion 4 INTERGENIC HET FN3239-S Chr8 7628536 7628536 0 0 Insertion 93 upstream_gene_variant HET FN3239-S Chr9 12063019 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr9 13809908 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr9 2582905 2582906 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os09g04850 retrotransposon protein, putative, unclassified, expressed FN3239-S Chr9 3675961 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3239-S Chr9 8309066 G-A 0 0 Single Base Substitution 0 INTERGENIC HET