FN3242-S Chr1 15931960 15931967 0 0 Deletion 7 FRAME_SHIFT HET LOC_Os01g28440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3242-S Chr1 20202873 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3242-S Chr1 2224340 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr1 28720299 G-T 0 0 Single Base Substitution 0 INTRON HET FN3242-S Chr1 28851235 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr1 32388953 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr1 42765156 42765156 0 0 Insertion 72 downstream_gene_variant HET FN3242-S Chr10 10358766 10358768 0 0 Deletion 2 INTERGENIC HET FN3242-S Chr10 11554802 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr10 17096592 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g32640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3242-S Chr10 19099840 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3242-S Chr10 20503572 T-C 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR HET LOC_Os10g38370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3242-S Chr10 20860564 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr11 15096452 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr11 23240849 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr11 4272854 Chr9 3387639 0 Translocation 0 LOC_Os09g06990 retrotransposon protein, putative, Ty3-gypsy subclass FN3242-S Chr11 4452873 Chr7 29240857 0 Translocation 0 FN3242-S Chr12 10315826 10315827 0 0 Deletion 1 upstream_gene_variant HET FN3242-S Chr12 15031588 15031588 0 0 Insertion 3 upstream_gene_variant HET FN3242-S Chr12 19092032 19585400 0 0 Inversion 493368 FN3242-S Chr12 19092065 19585402 0 0 Inversion 493337 FN3242-S Chr12 19859914 Chr1 29752298 0 Translocation 0 FN3242-S Chr12 20935546 Chr2 19189879 0 Translocation 0 FN3242-S Chr12 22044885 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr12 22840287 22840335 0 0 Deletion 48 upstream_gene_variant HET FN3242-S Chr12 24165325 24165331 0 0 Deletion 6 CODON_DELETION HET LOC_Os12g39260 retrotransposon protein, putative, unclassified, expressed FN3242-S Chr12 675513 T-A 0 0 Single Base Substitution 0 INTRON HET FN3242-S Chr2 13177588 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr2 13663354 13663354 0 0 Insertion 42 intergenic_region HET FN3242-S Chr2 13856914 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr2 21901986 21901992 0 0 Deletion 6 INTERGENIC HOMO FN3242-S Chr2 22501529 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3242-S Chr2 8186018 8186018 0 0 Insertion 6 upstream_gene_variant HET FN3242-S Chr3 14700134 14700142 0 0 Deletion 8 INTERGENIC HET FN3242-S Chr3 14977844 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr3 26256254 26256255 0 0 Deletion 1 INTERGENIC HOMO FN3242-S Chr3 27819477 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr3 29268406 29268408 0 0 Deletion 2 INTRON HOMO FN3242-S Chr3 33561325 33561327 0 0 Deletion 2 INTERGENIC HET FN3242-S Chr3 7404426 7404426 0 0 Insertion 32 upstream_gene_variant HET FN3242-S Chr4 23411170 23411177 0 0 Deletion 7 INTERGENIC HET FN3242-S Chr4 30649682 30649683 0 0 Deletion 1 frameshift_variant HET LOC_Os04g51720 retrotransposon protein, putative, unclassified, expressed FN3242-S Chr4 30796503 31365941 0 0 Inversion 569438 LOC_Os04g51900 expressed protein FN3242-S Chr4 30796512 31369157 0 0 Inversion 572645 LOC_Os04g51900 expressed protein FN3242-S Chr4 30796512 31369157 0 0 Inversion 572645 LOC_Os04g52690 AAA family ATPase, putative, expressed FN3242-S Chr4 3903077 3903077 0 0 Insertion 1 upstream_gene_variant HET FN3242-S Chr4 4186719 4186720 0 0 Deletion 1 3_prime_UTR_variant HET FN3242-S Chr4 7595222 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr4 870148 870148 0 0 Insertion 9 upstream_gene_variant HET FN3242-S Chr4 9530351 9530351 0 0 Insertion 12 disruptive_inframe_insertion HET LOC_Os04g17420 retrotransposon protein, putative, Ty3-gypsy subclass FN3242-S Chr5 12035883 12035883 0 0 Insertion 1 upstream_gene_variant HET FN3242-S Chr5 15857292 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g27280 retrotransposon protein, putative, unclassified, expressed FN3242-S Chr5 20367557 Chr3 16525221 0 Translocation 0 LOC_Os03g29100 retrotransposon protein, putative, unclassified, expressed FN3242-S Chr5 21081356 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3242-S Chr5 4512103 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr5 6123001 6141000 0 0 Deletion 17999 LOC_Os05g10980 REX1 DNA Repair family protein, expressed FN3242-S Chr5 6123001 6141000 0 0 Deletion 17999 LOC_Os05g18294 SEC14 cytosolic factor family protein, putative, expressed FN3242-S Chr5 6553361 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr5 8199020 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr6 1146007 1146013 0 0 Deletion 6 CODON_CHANGE_PLUS_CODON_DELETION HOMO LOC_Os06g03110 expressed protein FN3242-S Chr6 21472452 21472452 0 0 Insertion 2 upstream_gene_variant HET FN3242-S Chr6 25826150 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr6 27799619 27799620 0 0 Deletion 1 INTERGENIC HET FN3242-S Chr6 346730 346731 0 0 Deletion 1 downstream_gene_variant HET FN3242-S Chr7 17963501 17963525 0 0 Deletion 24 disruptive_inframe_deletion HET LOC_Os07g30350 retrotransposon protein, putative, unclassified, expressed FN3242-S Chr7 20169555 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g33730 NB-ARC domain containing protein, expressed FN3242-S Chr7 20169556 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g33730 NB-ARC domain containing protein, expressed FN3242-S Chr7 21051171 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g35150 hypothetical protein FN3242-S Chr7 27345590 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g45820 retrotransposon protein, putative, unclassified FN3242-S Chr7 27356422 27356422 0 0 Insertion 1 frameshift_variant HET LOC_Os07g45830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3242-S Chr7 611192 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr8 14361702 Chr4 28000559 0 Translocation 0 FN3242-S Chr8 16384199 Chr7 15520381 0 Translocation 0 FN3242-S Chr8 23615045 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3242-S Chr8 3731944 3731944 0 0 Insertion 1 upstream_gene_variant HET FN3242-S Chr8 4126991 Chr1 3219749 0 Translocation 0 FN3242-S Chr9 11341172 11341172 0 0 Insertion 1 frameshift_variant HET LOC_Os09g18500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3242-S Chr9 17230991 17230997 0 0 Deletion 6 INTERGENIC HET FN3242-S Chr9 18915076 Chr4 31369155 0 Translocation 0 LOC_Os04g52690 AAA family ATPase, putative, expressed FN3242-S Chr9 19025733 Chr4 31365950 0 Translocation 0 FN3242-S Chr9 19027031 Chr4 6860291 0 Translocation 0 FN3242-S Chr9 21364164 21364172 0 0 Deletion 8 INTERGENIC HOMO FN3242-S Chr9 21364413 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3242-S Chr9 9055964 9055965 0 0 Deletion 1 frameshift_variant HET LOC_Os09g15020 retrotransposon protein, putative, unclassified, expressed