FN3245-S Chr1 12846957 12846958 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr1 13065211 13065212 0 0 Deletion 1 frameshift_variant HET LOC_Os01g23230 retrotransposon protein, putative, unclassified FN3245-S Chr1 13740009 13740009 0 0 Insertion 1 downstream_gene_variant HET FN3245-S Chr1 13843500 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g24560 fruit bromelain precursor, putative, expressed FN3245-S Chr1 15530854 15530866 0 0 Deletion 12 upstream_gene_variant HET FN3245-S Chr1 15752577 15752577 0 0 Insertion 1 intron_variant HET FN3245-S Chr1 1819920 1819922 0 0 Deletion 2 upstream_gene_variant HET FN3245-S Chr1 19823851 19823851 0 0 Insertion 86 5_prime_UTR_variant HET FN3245-S Chr1 20070469 20070482 0 0 Deletion 13 splice_acceptor_variant&disruptive_inframe_deletion&splice_region_variant&intron_variant HET LOC_Os01g36250 transposon protein, putative, unclassified, expressed FN3245-S Chr1 20426216 20426217 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr1 20840615 20840800 0 0 Deletion 185 5_prime_UTR_variant HET FN3245-S Chr1 23424765 23424766 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr1 24651711 24651711 0 0 Insertion 5 intergenic_region HET FN3245-S Chr1 25395001 25411000 0 0 Deletion 15999 FN3245-S Chr1 29415898 29415898 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr1 29861764 29861764 0 0 Insertion 6 disruptive_inframe_insertion HET LOC_Os01g51950 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr1 32215709 32215710 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr1 35281004 35281005 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr1 38346317 38346317 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr1 4555400 4555401 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr1 8338422 8338428 0 0 Deletion 6 3_prime_UTR_variant HET FN3245-S Chr1 9574968 9574971 0 0 Deletion 3 upstream_gene_variant HET FN3245-S Chr10 10616114 Chr4 11307792 0 Translocation 0 FN3245-S Chr10 12643396 Chr8 7530758 0 Translocation 0 FN3245-S Chr10 13411238 13411239 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr10 15091382 15091382 0 0 Insertion 1 intron_variant HET FN3245-S Chr10 15534467 15534489 0 0 Deletion 22 upstream_gene_variant HET FN3245-S Chr10 1625407 1625407 0 0 Insertion 3 intron_variant HET FN3245-S Chr10 21529646 Chr7 18936784 0 Translocation 0 FN3245-S Chr10 3244889 3244889 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr10 3245048 3245048 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr10 4565997 4566001 0 0 Deletion 4 upstream_gene_variant HET FN3245-S Chr10 5025523 5025523 0 0 Insertion 1 downstream_gene_variant HET FN3245-S Chr10 5052218 5052218 0 0 Insertion 14 frameshift_variant HET LOC_Os10g09350 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr10 5960447 5960468 0 0 Deletion 21 inframe_deletion HET LOC_Os10g10780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3245-S Chr10 6438571 6438571 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr10 6618992 Chr6 13457409 0 Translocation 0 LOC_Os06g23080 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr10 6618992 Chr6 13457409 0 Translocation 0 LOC_Os10g11930 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr10 8093846 8093893 0 0 Deletion 47 intergenic_region HET FN3245-S Chr10 8164253 8164256 0 0 Deletion 3 intergenic_region HET FN3245-S Chr10 9076230 Chr6 16342071 0 Translocation 0 FN3245-S Chr10 9912215 Chr2 32908783 0 Translocation 0 LOC_Os02g53740 XI-I, putative, expressed FN3245-S Chr11 10284003 10284003 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr11 10867323 10867323 0 0 Insertion 1 downstream_gene_variant HET FN3245-S Chr11 1198108 1198113 0 0 Deletion 5 upstream_gene_variant HET FN3245-S Chr11 14447008 14447009 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr11 14496676 Chr4 3485596 0 Translocation 0 FN3245-S Chr11 22107950 22107950 0 0 Insertion 12 disruptive_inframe_insertion HET LOC_Os11g37430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr11 23459130 23459130 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr11 2651684 2651684 0 0 Insertion 1 intergenic_region HET FN3245-S Chr11 26698392 Chr2 18311085 0 Translocation 0 FN3245-S Chr11 27417015 Chr6 24472735 0 Translocation 0 FN3245-S Chr11 28267919 Chr3 31985112 0 Translocation 0 LOC_Os11g47039 expressed protein FN3245-S Chr11 28681192 Chr4 575619 0 Translocation 0 FN3245-S Chr11 29010108 Chr3 31102190 0 Translocation 0 FN3245-S Chr11 4452873 Chr2 30921387 0 Translocation 0 FN3245-S Chr11 5197570 Chr3 105984 0 Translocation 0 FN3245-S Chr11 5721701 5721701 0 0 Insertion 2 intergenic_region HET FN3245-S Chr11 9868426 9868427 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr11 996012 996012 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr12 10043726 Chr9 9544629 0 Translocation 0 LOC_Os09g15639 expressed protein FN3245-S Chr12 10315562 10315562 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr12 10915936 10915936 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr12 13132434 13132434 0 0 Insertion 1 splice_region_variant&intron_variant HET FN3245-S Chr12 13724499 13724502 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os12g24120 retrotransposon protein, putative, unclassified FN3245-S Chr12 13726014 13726015 0 0 Deletion 1 frameshift_variant HET LOC_Os12g24120 retrotransposon protein, putative, unclassified FN3245-S Chr12 13921592 13921592 0 0 Insertion 3 downstream_gene_variant HET FN3245-S Chr12 14357097 14357098 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr12 16085025 Chr6 5454630 0 Translocation 0 FN3245-S Chr12 17178822 17178823 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr12 18199282 18199283 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr12 1955692 1955694 0 0 Deletion 2 upstream_gene_variant HET FN3245-S Chr12 20599564 20599574 0 0 Deletion 10 downstream_gene_variant HET FN3245-S Chr12 20723881 20723881 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr12 2115006 2115006 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr12 21643961 21643961 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr12 22891160 22891162 0 0 Deletion 2 upstream_gene_variant HET FN3245-S Chr12 23996885 23996885 0 0 Insertion 2 frameshift_variant HET LOC_Os12g39010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3245-S Chr12 24309023 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3245-S Chr12 26886516 26886530 0 0 Deletion 14 upstream_gene_variant HET FN3245-S Chr12 321752 Chr11 305583 0 Translocation 0 FN3245-S Chr12 449284 449285 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr12 6032542 Chr4 5469828 0 Translocation 0 LOC_Os12g11200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr2 14917430 14917451 0 0 Deletion 21 upstream_gene_variant HET FN3245-S Chr2 15088898 15088899 0 0 Deletion 1 intron_variant HET FN3245-S Chr2 21213387 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3245-S Chr2 23617523 23617524 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr2 27133113 Chr1 25821321 0 Translocation 0 FN3245-S Chr2 29368572 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3245-S Chr2 30256809 30256811 0 0 Deletion 2 upstream_gene_variant HET FN3245-S Chr2 31580563 31580631 0 0 Deletion 68 downstream_gene_variant HET FN3245-S Chr2 32364760 32364760 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr2 34103499 34103499 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr2 6629956 6629960 0 0 Deletion 4 3_prime_UTR_variant HET FN3245-S Chr2 9129984 9129985 0 0 Deletion 1 frameshift_variant HET LOC_Os02g16050 transposon protein, putative, unclassified, expressed FN3245-S Chr3 12215476 12215477 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr3 13537845 13537845 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr3 17656146 17656146 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr3 19853869 19853869 0 0 Insertion 6 disruptive_inframe_insertion HET LOC_Os03g35830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr3 19856370 19856379 0 0 Deletion 9 upstream_gene_variant HET FN3245-S Chr3 24889760 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3245-S Chr3 27799147 27799148 0 0 Deletion 1 intergenic_region HET FN3245-S Chr3 30434943 30434944 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr3 30622193 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3245-S Chr3 31641144 31641146 0 0 Deletion 2 upstream_gene_variant HET FN3245-S Chr3 34698635 34698635 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr3 35366795 35366795 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr3 9118757 9118759 0 0 Deletion 2 upstream_gene_variant HET FN3245-S Chr4 10219744 10219745 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr4 10461352 10461352 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr4 10813561 10813562 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr4 11843784 11843785 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr4 12427480 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3245-S Chr4 12856236 12856271 0 0 Deletion 35 downstream_gene_variant HET FN3245-S Chr4 13041511 13041527 0 0 Deletion 16 frameshift_variant HET LOC_Os04g22980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr4 15697810 15697811 0 0 Deletion 1 intergenic_region HET FN3245-S Chr4 16774078 Chr1 31955373 0 Translocation 0 FN3245-S Chr4 17143631 17143654 0 0 Deletion 23 upstream_gene_variant HET FN3245-S Chr4 18576921 18576922 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr4 1919348 1919348 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr4 1943386 1943386 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr4 19750638 19750639 0 0 Deletion 1 intron_variant HET FN3245-S Chr4 20748672 20748673 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr4 22739525 22739526 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr4 2364928 2365025 0 0 Deletion 97 upstream_gene_variant HET FN3245-S Chr4 24563484 24563484 0 0 Insertion 60 downstream_gene_variant HET FN3245-S Chr4 26415072 26415073 0 0 Deletion 1 splice_region_variant&intron_variant HET FN3245-S Chr4 27580126 Chr1 36209600 0 Translocation 0 FN3245-S Chr4 29926613 29926617 0 0 Deletion 4 upstream_gene_variant HET FN3245-S Chr4 31870252 31870253 0 0 Deletion 1 intergenic_region HET FN3245-S Chr4 32281526 Chr3 21730909 0 Translocation 0 LOC_Os03g39110 expressed protein FN3245-S Chr4 34833940 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3245-S Chr4 4809526 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3245-S Chr4 5754611 5754611 0 0 Insertion 7 upstream_gene_variant HET FN3245-S Chr4 6737623 6737624 0 0 Deletion 1 intergenic_region HET FN3245-S Chr4 8142327 8142340 0 0 Deletion 13 upstream_gene_variant HET FN3245-S Chr4 8438412 8438414 0 0 Deletion 2 downstream_gene_variant HET FN3245-S Chr5 10291464 10291470 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os05g17900 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr5 10431881 10431881 0 0 Insertion 1 downstream_gene_variant HET FN3245-S Chr5 10467225 10467225 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr5 11102261 11102261 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr5 11131325 11131326 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr5 11364432 11364475 0 0 Deletion 43 intron_variant HET FN3245-S Chr5 11570070 11570070 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr5 12748126 12748126 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr5 13910990 13910992 0 0 Deletion 2 downstream_gene_variant HET FN3245-S Chr5 14975079 14975115 0 0 Deletion 36 upstream_gene_variant HET FN3245-S Chr5 1675589 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3245-S Chr5 17610321 17610428 0 0 Deletion 107 upstream_gene_variant HET FN3245-S Chr5 18211436 18211436 0 0 Insertion 3 inframe_insertion HET LOC_Os05g31330 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr5 1982539 1982591 0 0 Deletion 52 upstream_gene_variant HET FN3245-S Chr5 20839914 20839915 0 0 Deletion 1 frameshift_variant HET LOC_Os05g35100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3245-S Chr5 23265857 23265859 0 0 Deletion 2 upstream_gene_variant HET FN3245-S Chr5 24701817 24701819 0 0 Deletion 2 downstream_gene_variant HET FN3245-S Chr5 26005973 Chr1 33854335 0 Translocation 0 LOC_Os01g58570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr5 26005973 Chr1 33854335 0 Translocation 0 LOC_Os05g44730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr5 26266395 26266396 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr5 27538311 27538311 0 0 Insertion 13 3_prime_UTR_variant HET FN3245-S Chr5 28845279 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3245-S Chr5 28845280 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3245-S Chr5 3907959 3907961 0 0 Deletion 2 upstream_gene_variant HET FN3245-S Chr5 4507891 4507892 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr5 4530110 4530111 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr5 5128541 5128542 0 0 Deletion 1 frameshift_variant HET LOC_Os05g09170 transposon protein, putative, CACTA, En/Spm sub-class FN3245-S Chr5 5669206 5669221 0 0 Deletion 15 upstream_gene_variant HET FN3245-S Chr5 7532986 Chr1 22601305 0 Translocation 0 FN3245-S Chr5 8548172 8548172 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr5 8712003 8712013 0 0 Deletion 10 downstream_gene_variant HET FN3245-S Chr5 9255423 Chr4 16054484 0 Translocation 0 FN3245-S Chr5 9666851 9666851 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr5 9671601 9671607 0 0 Deletion 6 inframe_insertion HET LOC_Os05g16960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr6 10988813 10988813 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr6 13715388 Chr4 25851337 0 Translocation 0 FN3245-S Chr6 13880584 13880584 0 0 Insertion 3 upstream_gene_variant HET FN3245-S Chr6 15437108 15437262 0 0 Deletion 154 intergenic_region HET FN3245-S Chr6 16242922 16242922 0 0 Insertion 1 downstream_gene_variant HET FN3245-S Chr6 17621866 17621866 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr6 1913018 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3245-S Chr6 19215709 19215709 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr6 19325169 19860118 0 0 Inversion 534949 FN3245-S Chr6 19537029 19537029 0 0 Insertion 1 intron_variant HET FN3245-S Chr6 22249449 Chr4 20828281 0 Translocation 0 FN3245-S Chr6 22487389 22520889 0 0 Inversion 33500 FN3245-S Chr6 23060582 23060582 0 0 Insertion 2 downstream_gene_variant HET FN3245-S Chr6 24116737 24116738 0 0 Deletion 1 frameshift_variant HET LOC_Os06g40480 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr6 24164740 24164741 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr6 2677592 2677592 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr6 27132288 27132289 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr6 27934952 27935548 0 0 Inversion 596 FN3245-S Chr6 28607046 28607046 0 0 Insertion 26 downstream_gene_variant HET FN3245-S Chr6 29548862 29548863 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr6 30234244 30234244 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr6 4130423 4130423 0 0 Insertion 4 intergenic_region HET FN3245-S Chr6 5789500 5789500 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr6 7782065 Chr1 32154717 0 Translocation 0 FN3245-S Chr7 11077835 Chr4 29420506 0 Translocation 0 LOC_Os04g49290 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr7 11168859 Chr2 18525530 0 Translocation 0 LOC_Os07g18860 expressed protein FN3245-S Chr7 11613268 11613269 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr7 14140991 14140996 0 0 Deletion 5 upstream_gene_variant HET FN3245-S Chr7 16691133 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3245-S Chr7 17245231 Chr2 26403903 0 Translocation 0 LOC_Os07g29360 tetratricopeptide repeat domain containing protein, expressed FN3245-S Chr7 17813428 17813428 0 0 Insertion 3 upstream_gene_variant HET FN3245-S Chr7 17839585 17839585 0 0 Insertion 49 downstream_gene_variant HET FN3245-S Chr7 17892522 17892522 0 0 Insertion 1 frameshift_variant HET LOC_Os07g30270 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr7 18567912 18567913 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr7 19804745 19804752 0 0 Deletion 7 frameshift_variant HET LOC_Os07g33170 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr7 21174152 Chr4 8324312 0 Translocation 0 FN3245-S Chr7 230667 230667 0 0 Insertion 1 frameshift_variant HET LOC_Os07g01360 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr7 23579390 23579390 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr7 26764375 26764375 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr7 27282369 27282369 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr7 28036857 28036857 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr7 28478449 28478624 0 0 Inversion 175 FN3245-S Chr7 28603125 28603125 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr7 3401664 3401665 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr7 7327466 Chr2 476260 0 Translocation 0 FN3245-S Chr7 7459481 7459497 0 0 Deletion 16 upstream_gene_variant HET FN3245-S Chr7 7871687 7871688 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr7 9846175 9846175 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr7 9954405 9954405 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr8 10034546 Chr1 17844084 0 Translocation 0 FN3245-S Chr8 11615568 11615568 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr8 11618149 11618149 0 0 Insertion 1 downstream_gene_variant HET FN3245-S Chr8 12448995 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3245-S Chr8 12587677 12587677 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr8 13012161 13012161 0 0 Insertion 1 frameshift_variant HET LOC_Os08g21710 retrotransposon protein, putative, unclassified FN3245-S Chr8 1334263 1334264 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr8 13463309 13463312 0 0 Deletion 3 downstream_gene_variant HET FN3245-S Chr8 13644875 13644876 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr8 14246253 14246253 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr8 14952447 14952448 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr8 16263145 16263145 0 0 Insertion 62 upstream_gene_variant HET FN3245-S Chr8 17930679 17930680 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr8 17952544 17952544 0 0 Insertion 6 intergenic_region HET FN3245-S Chr8 18715084 18715085 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr8 21147069 21147072 0 0 Deletion 3 intergenic_region HET FN3245-S Chr8 21201494 21201497 0 0 Deletion 3 inframe_deletion HET LOC_Os08g33870 retrotransposon protein, putative, unclassified, expressed FN3245-S Chr8 25145611 25145611 0 0 Insertion 41 upstream_gene_variant HET FN3245-S Chr8 2706207 2706210 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os08g05180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr8 28232745 28232748 0 0 Deletion 3 upstream_gene_variant HET FN3245-S Chr8 28403330 Chr7 4246476 0 Translocation 0 FN3245-S Chr8 4909193 Chr2 17732032 0 Translocation 0 LOC_Os08g08520 expressed protein FN3245-S Chr8 5930950 5930953 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os08g10220 transposon protein, putative, CACTA, En/Spm sub-class FN3245-S Chr8 5931138 5931159 0 0 Deletion 21 inframe_deletion HET LOC_Os08g10220 transposon protein, putative, CACTA, En/Spm sub-class FN3245-S Chr8 6918728 6918729 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr8 7011702 7011702 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr8 7384142 7384142 0 0 Insertion 2 upstream_gene_variant HET FN3245-S Chr8 8545415 8545416 0 0 Deletion 1 downstream_gene_variant HET FN3245-S Chr9 10395548 Chr8 1219436 0 Translocation 0 FN3245-S Chr9 11971063 11971064 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr9 12787862 12787863 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr9 14267673 14267673 0 0 Insertion 1 frameshift_variant HET LOC_Os09g23920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr9 16234137 16234138 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr9 1651315 1651327 0 0 Deletion 12 intergenic_region HET FN3245-S Chr9 16737773 Chr7 1125457 0 Translocation 0 FN3245-S Chr9 1938869 1938869 0 0 Insertion 2 frameshift_variant HET LOC_Os09g03820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr9 197516 197517 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr9 20171638 20171670 0 0 Deletion 32 upstream_gene_variant HET FN3245-S Chr9 2285922 2285923 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr9 2321508 Chr4 12931321 0 Translocation 0 FN3245-S Chr9 2935867 2935867 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr9 2936380 2936381 0 0 Deletion 1 upstream_gene_variant HET FN3245-S Chr9 3433203 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3245-S Chr9 4862084 4862084 0 0 Insertion 1 downstream_gene_variant HET FN3245-S Chr9 514519 514519 0 0 Insertion 3 upstream_gene_variant HET FN3245-S Chr9 5748486 5748486 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr9 6308330 6308331 0 0 Deletion 1 frameshift_variant HET LOC_Os09g11360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3245-S Chr9 783925 783925 0 0 Insertion 1 upstream_gene_variant HET FN3245-S Chr9 9932495 9932500 0 0 Deletion 5 upstream_gene_variant HET