FN3248-S Chr1 11398181 11398183 0 0 Deletion 2 downstream_gene_variant HET FN3248-S Chr1 12180234 12180235 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr1 12473482 12473483 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr1 12951506 12951507 0 0 Deletion 1 intron_variant HET FN3248-S Chr1 13741222 13741222 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr1 13765384 13765384 0 0 Insertion 2 downstream_gene_variant HET FN3248-S Chr1 14254043 14254074 0 0 Deletion 31 downstream_gene_variant HET FN3248-S Chr1 15748933 15748933 0 0 Insertion 1 intron_variant HET FN3248-S Chr1 16090567 16090570 0 0 Deletion 3 downstream_gene_variant HET FN3248-S Chr1 16644005 16644008 0 0 Deletion 3 upstream_gene_variant HET FN3248-S Chr1 16773079 16773080 0 0 Deletion 1 intergenic_region HET FN3248-S Chr1 16852109 16852109 0 0 Insertion 8 INTERGENIC HET FN3248-S Chr1 1820204 1820207 0 0 Deletion 3 inframe_deletion HET LOC_Os01g04140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3248-S Chr1 19487736 19487809 0 0 Deletion 73 upstream_gene_variant HET FN3248-S Chr1 19490438 19490438 0 0 Insertion 3 inframe_insertion HET LOC_Os01g35210 transposon protein, putative, CACTA, En/Spm sub-class FN3248-S Chr1 19523854 19523854 0 0 Insertion 4 upstream_gene_variant HET FN3248-S Chr1 19586970 19586971 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr1 2008374 2008375 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr1 20487038 20487038 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr1 21327368 21327368 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr1 23420341 23420341 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr1 25418134 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN3248-S Chr1 26382072 26382073 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr1 27444412 27444412 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr1 31465503 31465503 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr1 36853199 36853199 0 0 Insertion 2 upstream_gene_variant HET FN3248-S Chr1 36889276 36889276 0 0 Insertion 2 intron_variant HET FN3248-S Chr1 3794628 3794628 0 0 Insertion 2 intergenic_region HET FN3248-S Chr1 4787551 4787552 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr1 7898139 7898221 0 0 Deletion 82 5_prime_UTR_variant HET FN3248-S Chr10 10959300 10959301 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr10 12361220 C-T 0 0 Single Base Substitution 0 INTRON HET FN3248-S Chr10 1254945 1254945 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr10 12685695 Chr9 1170880 0 Translocation 0 FN3248-S Chr10 12849436 12849436 0 0 Insertion 2 intron_variant HET FN3248-S Chr10 15179776 15179776 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr10 15557603 Chr4 15030348 0 Translocation 0 FN3248-S Chr10 16889108 16889109 0 0 Deletion 1 splice_region_variant&intron_variant HET FN3248-S Chr10 19398743 Chr8 19810927 0 Translocation 0 FN3248-S Chr10 22644181 Chr8 19749033 0 Translocation 0 FN3248-S Chr10 3386842 3386908 0 0 Deletion 66 intergenic_region HET FN3248-S Chr10 5024451 5024480 0 0 Deletion 29 downstream_gene_variant HET FN3248-S Chr10 5104974 5104974 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr10 6821333 6821334 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr10 7004734 7004737 0 0 Deletion 3 inframe_deletion HET LOC_Os10g12570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3248-S Chr10 7181276 7181276 0 0 Insertion 2 downstream_gene_variant HET FN3248-S Chr10 7190781 7190784 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os10g13320 retrotransposon protein, putative, Ty3-gypsy subclass FN3248-S Chr10 8096360 8096450 0 0 Deletion 90 intergenic_region HET FN3248-S Chr10 8733041 8733041 0 0 Insertion 1 frameshift_variant HET LOC_Os10g17340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr10 9142666 9142667 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr10 9143935 9143938 0 0 Deletion 3 inframe_deletion HET LOC_Os10g18042 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3248-S Chr11 10024566 10024568 0 0 Deletion 2 intergenic_region HET FN3248-S Chr11 10995148 10995150 0 0 Deletion 2 frameshift_variant HET LOC_Os11g19230 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3248-S Chr11 11559601 Chr4 11340018 0 Translocation 0 FN3248-S Chr11 12810740 Chr5 8349916 0 Translocation 0 FN3248-S Chr11 15339318 Chr3 15104040 0 Translocation 0 FN3248-S Chr11 16017827 16017828 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr11 16518111 16518112 0 0 Deletion 1 intergenic_region HET FN3248-S Chr11 16553034 16553037 0 0 Deletion 3 upstream_gene_variant HET FN3248-S Chr11 16715081 16715085 0 0 Deletion 4 upstream_gene_variant HET FN3248-S Chr11 18646856 Chr2 19207247 0 Translocation 0 FN3248-S Chr11 20175274 Chr2 20082593 0 Translocation 0 LOC_Os02g33680 U-box domain containing protein, expressed FN3248-S Chr11 20201694 20201694 0 0 Insertion 5 upstream_gene_variant HET FN3248-S Chr11 20914642 20914643 0 0 Deletion 1 intron_variant HET FN3248-S Chr11 21225747 21225749 0 0 Deletion 2 upstream_gene_variant HET FN3248-S Chr11 22392417 22392418 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr11 27379330 27379339 0 0 Deletion 9 disruptive_inframe_deletion HET LOC_Os11g45240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr11 27830603 27830603 0 0 Insertion 4 intron_variant HET FN3248-S Chr11 28585656 28585656 0 0 Insertion 34 downstream_gene_variant HET FN3248-S Chr11 518555 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3248-S Chr11 6641179 6655804 0 0 Inversion 14625 FN3248-S Chr11 8239495 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3248-S Chr11 9979902 9979902 0 0 Insertion 1 intron_variant HET FN3248-S Chr12 11487340 11487341 0 0 Deletion 1 frameshift_variant HET LOC_Os12g19720 retrotransposon protein, putative, Ty3-gypsy subclass FN3248-S Chr12 12068757 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3248-S Chr12 12111714 12111714 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr12 12616516 12616516 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr12 12748236 12748262 0 0 Deletion 26 frameshift_variant HET LOC_Os12g22590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr12 14632611 14632611 0 0 Insertion 27 inframe_insertion HET LOC_Os12g25360 expressed protein FN3248-S Chr12 15425789 15425790 0 0 Deletion 1 frameshift_variant HET LOC_Os12g26400 retrotransposon protein, putative, unclassified, expressed FN3248-S Chr12 16274661 16274662 0 0 Deletion 1 splice_region_variant&intron_variant HET FN3248-S Chr12 16828399 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g28470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr12 18144669 18144669 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr12 19501223 19501225 0 0 Deletion 2 upstream_gene_variant HET FN3248-S Chr12 19773460 19773462 0 0 Deletion 2 downstream_gene_variant HET FN3248-S Chr12 20407378 20407378 0 0 Insertion 5 downstream_gene_variant HET FN3248-S Chr12 21069314 21069315 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr12 21603178 21603178 0 0 Insertion 33 upstream_gene_variant HET FN3248-S Chr12 23365140 23365140 0 0 Insertion 4 downstream_gene_variant HET FN3248-S Chr12 25786377 25786377 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr12 26403195 26403197 0 0 Deletion 2 INTERGENIC HET FN3248-S Chr12 26542753 26542754 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr12 26832904 26832905 0 0 Deletion 1 frameshift_variant HET LOC_Os12g43230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr12 5322117 5322117 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr12 7861029 7861029 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr12 8840829 Chr9 20497358 0 Translocation 0 FN3248-S Chr12 9721026 9721026 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr12 9879033 Chr10 327477 0 Translocation 0 FN3248-S Chr2 12254823 12254823 0 0 Insertion 2 upstream_gene_variant HET FN3248-S Chr2 13479110 13479110 0 0 Insertion 19 upstream_gene_variant HET FN3248-S Chr2 14767637 14767637 0 0 Insertion 1 frameshift_variant HET LOC_Os02g25330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3248-S Chr2 15336760 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g26100 retrotransposon protein, putative, unclassified, expressed FN3248-S Chr2 18680854 18680854 0 0 Insertion 1 frameshift_variant HET LOC_Os02g31190 retrotransposon protein, putative, unclassified, expressed FN3248-S Chr2 18944577 18944578 0 0 Deletion 1 intergenic_region HET FN3248-S Chr2 19722828 19722828 0 0 Insertion 7 upstream_gene_variant HET FN3248-S Chr2 2049139 2049142 0 0 Deletion 3 upstream_gene_variant HET FN3248-S Chr2 20642518 20642519 0 0 Deletion 1 frameshift_variant HET LOC_Os02g34450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr2 212723 212725 0 0 Deletion 2 downstream_gene_variant HET FN3248-S Chr2 21628696 21628698 0 0 Deletion 2 frameshift_variant HET LOC_Os02g36010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3248-S Chr2 21712057 21712057 0 0 Insertion 2 downstream_gene_variant HET FN3248-S Chr2 21913119 21913119 0 0 Insertion 1 frameshift_variant HET LOC_Os02g36290 hypothetical protein FN3248-S Chr2 22872844 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g37856 expressed protein FN3248-S Chr2 233169 233170 0 0 Deletion 1 frameshift_variant HET LOC_Os02g01390 retrotransposon protein, putative, unclassified, expressed FN3248-S Chr2 2707908 2707979 0 0 Deletion 71 upstream_gene_variant HET FN3248-S Chr2 31095157 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3248-S Chr2 34533100 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3248-S Chr2 7458562 7458562 0 0 Insertion 5 intergenic_region HET FN3248-S Chr2 9354444 9354444 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr2 9810243 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN3248-S Chr3 13209063 13209063 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr3 1392150 1392152 0 0 Deletion 2 upstream_gene_variant HET FN3248-S Chr3 17308988 17308989 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr3 17955681 17955747 0 0 Deletion 66 downstream_gene_variant HET FN3248-S Chr3 18907122 18907122 0 0 Insertion 2 upstream_gene_variant HET FN3248-S Chr3 19102222 19102222 0 0 Insertion 4 upstream_gene_variant HET FN3248-S Chr3 24403711 Chr2 11073643 0 Translocation 0 LOC_Os02g18954 GDSL-like lipase/acylhydrolase, putative, expressed FN3248-S Chr3 2456232 2456232 0 0 Insertion 6 upstream_gene_variant HET FN3248-S Chr3 27528813 27528829 0 0 Deletion 16 upstream_gene_variant HET FN3248-S Chr3 28218060 28218061 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr3 28500708 28500708 0 0 Insertion 11 intron_variant HET FN3248-S Chr3 29321548 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3248-S Chr3 35505770 35505770 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr3 36408469 36408469 0 0 Insertion 2 upstream_gene_variant HET FN3248-S Chr3 3707272 3707273 0 0 Deletion 1 5_prime_UTR_variant HET FN3248-S Chr3 6882163 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3248-S Chr3 823631 823631 0 0 Insertion 4 frameshift_variant HET LOC_Os03g02350 transposon protein, putative, unclassified, expressed FN3248-S Chr3 9428792 Chr1 16513483 0 Translocation 0 FN3248-S Chr4 10491365 10491365 0 0 Insertion 2 downstream_gene_variant HET FN3248-S Chr4 11145276 11145279 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os04g19990 retrotransposon protein, putative, unclassified, expressed FN3248-S Chr4 11152005 11152060 0 0 Deletion 55 upstream_gene_variant HET FN3248-S Chr4 12527674 12527675 0 0 Deletion 1 intron_variant HET FN3248-S Chr4 13728895 13728895 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr4 13728895 13728896 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr4 14413256 14413256 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr4 15697413 15697424 0 0 Deletion 11 intergenic_region HET FN3248-S Chr4 1729130 1729130 0 0 Insertion 2 downstream_gene_variant HET FN3248-S Chr4 18433001 18450000 0 0 Deletion 16999 LOC_Os04g30870 transposon protein, putative, unclassified, expressed FN3248-S Chr4 18433001 18450000 0 0 Deletion 16999 LOC_Os04g49370 expressed protein FN3248-S Chr4 20755843 20755843 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr4 2085445 Chr1 27847846 0 Translocation 0 FN3248-S Chr4 23032051 Chr3 22887559 0 Translocation 0 FN3248-S Chr4 2349290 2349290 0 0 Insertion 1 frameshift_variant HET LOC_Os04g04880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr4 24701280 24701284 0 0 Deletion 4 frameshift_variant HET LOC_Os04g41660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3248-S Chr4 2633535 2633536 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr4 2724297 2724297 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr4 28946449 28946450 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr4 3005728 3005728 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr4 301058 Chr3 12783338 0 Translocation 0 LOC_Os03g22300 retrotransposon protein, putative, unclassified, expressed FN3248-S Chr4 31709157 31709158 0 0 Deletion 1 intergenic_region HET FN3248-S Chr4 32262548 32262581 0 0 Deletion 33 splice_region_variant&intron_variant HET FN3248-S Chr4 3272698 3272698 0 0 Insertion 6 intron_variant HET FN3248-S Chr4 33111949 Chr2 8784450 0 Translocation 0 LOC_Os04g55620 receptor kinase, putative, expressed FN3248-S Chr4 3362036 3362038 0 0 Deletion 2 upstream_gene_variant HET FN3248-S Chr4 35228248 35228249 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr4 3853765 3853765 0 0 Insertion 3 inframe_insertion HET LOC_Os04g07260 expressed protein FN3248-S Chr4 5188344 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3248-S Chr4 5348461 5348465 0 0 Deletion 4 upstream_gene_variant HET FN3248-S Chr4 5455958 5455959 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr4 5510393 5510411 0 0 Deletion 18 disruptive_inframe_insertion HET LOC_Os04g10190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr4 729097 Chr3 31273134 0 Translocation 0 FN3248-S Chr5 10106087 10106087 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr5 11217752 11217752 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr5 11604566 11604567 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr5 12568685 12568685 0 0 Insertion 69 upstream_gene_variant HET FN3248-S Chr5 12606746 12606747 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr5 14559802 14559803 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr5 15435989 15435989 0 0 Insertion 4 upstream_gene_variant HET FN3248-S Chr5 19007447 19007447 0 0 Insertion 67 upstream_gene_variant HET FN3248-S Chr5 19604027 19604028 0 0 Deletion 1 frameshift_variant HET LOC_Os05g33370 transposon protein, putative, unclassified, expressed FN3248-S Chr5 19861395 19861396 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr5 2040198 2040198 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr5 21031185 21031256 0 0 Deletion 71 upstream_gene_variant HET FN3248-S Chr5 2429594 2429594 0 0 Insertion 1 frameshift_variant HET LOC_Os05g05000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr5 25602269 25602269 0 0 Insertion 1 splice_region_variant&intron_variant HET FN3248-S Chr5 26433924 26433927 0 0 Deletion 3 upstream_gene_variant HET FN3248-S Chr5 2808568 2808568 0 0 Insertion 4 upstream_gene_variant HET FN3248-S Chr5 29180296 29180302 0 0 Deletion 6 downstream_gene_variant HET FN3248-S Chr5 3997276 3997277 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr5 4521173 4521174 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr5 4954541 4954541 0 0 Insertion 6 upstream_gene_variant HET FN3248-S Chr5 5438040 5438042 0 0 Deletion 2 upstream_gene_variant HET FN3248-S Chr5 5593266 5593266 0 0 Insertion 53 intergenic_region HET FN3248-S Chr5 6620034 6620060 0 0 Deletion 26 upstream_gene_variant HET FN3248-S Chr5 682769 682770 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr5 7540094 7540112 0 0 Deletion 18 upstream_gene_variant HET FN3248-S Chr5 7898988 7898990 0 0 Deletion 2 downstream_gene_variant HET FN3248-S Chr5 8194568 8194568 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr5 8774912 8774912 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr6 10294224 10294224 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr6 11425551 11425552 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr6 120252 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3248-S Chr6 12518358 12518358 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr6 13770352 13770354 0 0 Deletion 2 upstream_gene_variant HET FN3248-S Chr6 13904097 13904097 0 0 Insertion 2 upstream_gene_variant HET FN3248-S Chr6 14042087 14042087 0 0 Insertion 5 upstream_gene_variant HET FN3248-S Chr6 15083983 15083983 0 0 Insertion 4 upstream_gene_variant HET FN3248-S Chr6 16760304 16760307 0 0 Deletion 3 upstream_gene_variant HET FN3248-S Chr6 16850956 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3248-S Chr6 22703991 Chr3 10562565 0 Translocation 0 FN3248-S Chr6 22790212 22790214 0 0 Deletion 2 downstream_gene_variant HET FN3248-S Chr6 23090979 23090979 0 0 Insertion 1 frameshift_variant HET LOC_Os06g38920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3248-S Chr6 25377805 25377810 0 0 Deletion 5 upstream_gene_variant HET FN3248-S Chr6 29300028 29300028 0 0 Insertion 31 downstream_gene_variant HET FN3248-S Chr6 30156123 30156125 0 0 Deletion 2 downstream_gene_variant HET FN3248-S Chr6 30197 30549 0 0 Deletion 352 upstream_gene_variant HET FN3248-S Chr7 10836465 10836466 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr7 14012509 14012511 0 0 Deletion 2 upstream_gene_variant HET FN3248-S Chr7 14974925 14974926 0 0 Deletion 1 5_prime_UTR_variant HET FN3248-S Chr7 16841968 16841968 0 0 Insertion 36 inframe_insertion HET LOC_Os07g28770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3248-S Chr7 21452372 21452373 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr7 27359823 Chr5 12027449 0 Translocation 0 LOC_Os05g20490 retrotransposon protein, putative, unclassified FN3248-S Chr7 27597848 27597848 0 0 Insertion 3 upstream_gene_variant HET FN3248-S Chr7 6159345 6159346 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr7 7461902 7461902 0 0 Insertion 1 intron_variant HET FN3248-S Chr7 8834473 Chr5 10239419 0 Translocation 0 FN3248-S Chr7 9666167 Chr4 14117299 0 Translocation 0 FN3248-S Chr7 9802103 9802103 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr7 9954189 9954189 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr8 11637046 11637062 0 0 Deletion 16 upstream_gene_variant HET FN3248-S Chr8 13096380 13096381 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr8 13578865 13578917 0 0 Deletion 52 upstream_gene_variant HET FN3248-S Chr8 13595702 13595702 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr8 13799011 13799012 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr8 13807996 13807997 0 0 Deletion 1 intron_variant HET FN3248-S Chr8 1444754 1444755 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr8 15298518 15298519 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr8 15300256 Chr2 20643804 0 Translocation 0 LOC_Os02g34450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3248-S Chr8 15818195 15818195 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr8 17025543 17025544 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr8 17507637 17507637 0 0 Insertion 11 downstream_gene_variant HET FN3248-S Chr8 17546388 17546389 0 0 Deletion 1 intergenic_region HET FN3248-S Chr8 17582030 17582030 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr8 2049740 2049741 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr8 20957028 20957028 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr8 22073984 22073985 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr8 24362510 24362510 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr8 26662495 26662495 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr8 26718688 26718688 0 0 Insertion 2 upstream_gene_variant HET FN3248-S Chr8 27982629 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g44490 retrotransposon protein, putative, unclassified, expressed FN3248-S Chr8 4370741 4370742 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr8 5195722 5195723 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr8 5495747 5495748 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr8 6938082 6938082 0 0 Insertion 2 upstream_gene_variant HET FN3248-S Chr8 7266096 7266096 0 0 Insertion 2 upstream_gene_variant HET FN3248-S Chr8 7313746 7313746 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr8 9162053 9162066 0 0 Deletion 13 upstream_gene_variant HET FN3248-S Chr9 106441 106442 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr9 11328800 11328801 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr9 14121999 14122001 0 0 Deletion 2 upstream_gene_variant HET FN3248-S Chr9 16373313 16373313 0 0 Insertion 3 downstream_gene_variant HET FN3248-S Chr9 16373604 16373605 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr9 17785615 17785615 0 0 Insertion 1 downstream_gene_variant HET FN3248-S Chr9 18079311 18079334 0 0 Deletion 23 frameshift_variant HET LOC_Os09g29730 transposon protein, putative, CACTA, En/Spm sub-class FN3248-S Chr9 18081938 18081939 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr9 18633431 18633431 0 0 Insertion 2 upstream_gene_variant HET FN3248-S Chr9 1946593 1946594 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr9 3286018 3286018 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr9 4517139 4517140 0 0 Deletion 1 downstream_gene_variant HET FN3248-S Chr9 4855689 4855689 0 0 Insertion 2 downstream_gene_variant HET FN3248-S Chr9 5354976 5354976 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr9 5754991 5754992 0 0 Deletion 1 upstream_gene_variant HET FN3248-S Chr9 6280172 Chr6 20090155 0 Translocation 0 FN3248-S Chr9 6695975 6695975 0 0 Insertion 14 splice_region_variant&intron_variant HET FN3248-S Chr9 681291 Chr3 24404315 0 Translocation 0 LOC_Os09g01980 retrotransposon protein, putative, unclassified, expressed FN3248-S Chr9 682399 Chr2 11074026 0 Translocation 0 LOC_Os02g18954 GDSL-like lipase/acylhydrolase, putative, expressed FN3248-S Chr9 682399 Chr2 11074026 0 Translocation 0 LOC_Os09g01980 retrotransposon protein, putative, unclassified, expressed FN3248-S Chr9 7426700 7426700 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr9 8474198 8474198 0 0 Insertion 1 upstream_gene_variant HET FN3248-S Chr9 8530445 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g14430 transposon protein, putative, CACTA, En/Spm sub-class, expressed