FN3250-S Chr1 11309324 11388518 0 0 Inversion 79194 FN3250-S Chr1 11309351 11388522 0 0 Inversion 79171 FN3250-S Chr1 19690203 A-T 0 0 Single Base Substitution 0 INTRON HET FN3250-S Chr1 21648605 21799906 0 0 Inversion 151301 LOC_Os01g38540 transposon protein, putative, unclassified, expressed FN3250-S Chr1 26358733 26358733 0 0 Insertion 39 downstream_gene_variant HET FN3250-S Chr1 6601948 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr1 747415 747416 0 0 Deletion 1 INTRON HOMO FN3250-S Chr10 12066617 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3250-S Chr10 12736440 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3250-S Chr10 1575290 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr10 16018075 16018376 0 0 Inversion 301 LOC_Os10g30750 appr-1-p processing enzyme family protein, putative, expressed FN3250-S Chr10 17611116 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g33440 NB-ARC domain containing protein, expressed FN3250-S Chr10 19429108 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr11 14426017 14426025 0 0 Deletion 8 downstream_gene_variant HET FN3250-S Chr11 19875314 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g34020 protein binding protein, putative, expressed FN3250-S Chr11 26003496 26003496 0 0 Insertion 43 intergenic_region HET FN3250-S Chr11 5805604 5805616 0 0 Deletion 12 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os11g10580 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3250-S Chr11 7937785 7937798 0 0 Deletion 13 INTERGENIC HET FN3250-S Chr12 17457969 17457970 0 0 Deletion 1 upstream_gene_variant HET FN3250-S Chr12 20343187 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3250-S Chr12 22243474 22243474 0 0 Insertion 1 upstream_gene_variant HET FN3250-S Chr12 3052036 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g06370 retrotransposon protein, putative, unclassified, expressed FN3250-S Chr12 3446330 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr12 9058987 9058988 0 0 Deletion 1 INTERGENIC HOMO FN3250-S Chr2 1894129 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g04290 retrotransposon protein, putative, unclassified, expressed FN3250-S Chr2 26485504 26485504 0 0 Insertion 24 upstream_gene_variant HET FN3250-S Chr2 27522001 27560000 0 0 Deletion 37999 LOC_Os02g45320 OsFBX58 - F-box domain containing protein, expressed FN3250-S Chr2 27522001 27560000 0 0 Deletion 37999 LOC_Os02g45330 expressed protein FN3250-S Chr2 27522001 27560000 0 0 Deletion 37999 LOC_Os02g45344 O-acyltransferase, putative, expressed FN3250-S Chr2 27522001 27560000 0 0 Deletion 37999 LOC_Os02g52260 expressed protein FN3250-S Chr2 29409010 29409011 0 0 Deletion 1 INTERGENIC HET FN3250-S Chr2 33516005 33516022 0 0 Deletion 17 FRAME_SHIFT HET LOC_Os02g54730 transmembrane amino acid transporter protein, putative, expressed FN3250-S Chr3 15638923 C-T 0 0 Single Base Substitution 0 INTRON HET FN3250-S Chr3 15638926 A-C 0 0 Single Base Substitution 0 INTRON HET FN3250-S Chr3 20152503 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g36330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3250-S Chr3 2184705 2184706 0 0 Deletion 1 INTERGENIC HET FN3250-S Chr3 21962625 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr3 2313072 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr3 25286380 A-G 0 0 Single Base Substitution 0 START_GAINED HET FN3250-S Chr3 26167183 26167187 0 0 Deletion 4 INTERGENIC HET FN3250-S Chr3 26298849 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr3 30631112 30631126 0 0 Deletion 14 INTERGENIC HOMO FN3250-S Chr3 31360911 31360912 0 0 Deletion 1 INTERGENIC HOMO FN3250-S Chr3 35979172 35979183 0 0 Deletion 11 UTR_5_PRIME HET FN3250-S Chr3 5257001 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3250-S Chr3 7445159 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3250-S Chr4 26544893 26544909 0 0 Deletion 16 FRAME_SHIFT HOMO LOC_Os04g44840 glycosyl hydrolase family 3 protein, putative, expressed FN3250-S Chr4 4641767 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr4 5659649 5659649 0 0 Insertion 4 INTRON HET FN3250-S Chr4 7655009 7655009 0 0 Insertion 1 INTERGENIC HET FN3250-S Chr4 9626315 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3250-S Chr5 10539001 10563000 0 0 Deletion 23999 LOC_Os05g18310 retrotransposon protein, putative, Ty3-gypsy subclass FN3250-S Chr5 10539001 10563000 0 0 Deletion 23999 LOC_Os05g18320 transposon protein, putative, unclassified FN3250-S Chr5 10539001 10563000 0 0 Deletion 23999 LOC_Os05g18330 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3250-S Chr5 10539001 10563000 0 0 Deletion 23999 LOC_Os05g18340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3250-S Chr5 10539001 10563000 0 0 Deletion 23999 LOC_Os05g18419 retrotransposon, putative, centromere-specific FN3250-S Chr5 13982992 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr5 14800674 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr5 23591730 23591735 0 0 Deletion 5 INTERGENIC HET FN3250-S Chr5 28257267 28257272 0 0 Deletion 5 INTERGENIC HET FN3250-S Chr5 29401436 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr6 30055046 30055242 0 0 Inversion 196 FN3250-S Chr7 11183551 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr7 12635249 Chr1 26030484 0 Translocation 0 FN3250-S Chr7 12635249 Chr1 26030492 0 Translocation 0 FN3250-S Chr7 17063107 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3250-S Chr7 19285974 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN3250-S Chr7 23468177 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g39170 retrotransposon protein, putative, unclassified, expressed FN3250-S Chr7 24240076 24240076 0 0 Insertion 31 upstream_gene_variant HET FN3250-S Chr7 2527216 2527218 0 0 Deletion 2 INTERGENIC HET FN3250-S Chr7 815322 T-C 0 0 Single Base Substitution 0 INTRON HET FN3250-S Chr7 9747416 9747439 0 0 Deletion 23 downstream_gene_variant HET FN3250-S Chr8 16907251 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3250-S Chr8 16989049 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3250-S Chr8 5028140 5028140 0 0 Insertion 8 upstream_gene_variant HET FN3250-S Chr8 5194750 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3250-S Chr8 6452147 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g10940 retrotransposon protein, putative, unclassified, expressed FN3250-S Chr8 775260 775302 0 0 Deletion 42 upstream_gene_variant HET FN3250-S Chr8 912597 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3250-S Chr8 9919555 9919561 0 0 Deletion 6 inframe_deletion HET LOC_Os08g16255 CPSF6 protein, putative, expressed FN3250-S Chr9 13180263 13180274 0 0 Deletion 11 INTERGENIC HOMO FN3250-S Chr9 16988835 16988841 0 0 Deletion 6 INTRON HET