FN3252-S Chr1 17534472 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr1 30408366 30408377 0 0 Deletion 11 FRAME_SHIFT HET LOC_Os01g52880 leucine-rich repeat family protein, putative, expressed FN3252-S Chr1 33490408 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3252-S Chr1 36321406 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr1 6952212 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3252-S Chr1 7867237 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3252-S Chr10 17308209 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr10 17611594 18372239 0 0 Inversion 760645 LOC_Os10g34430 Dicer, putative, expressed FN3252-S Chr10 17611596 18372240 0 0 Inversion 760644 LOC_Os10g34430 Dicer, putative, expressed FN3252-S Chr10 2010528 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3252-S Chr10 3994489 3994501 0 0 Deletion 12 INTERGENIC HET FN3252-S Chr10 688756 Chr9 16008988 0 Translocation 0 FN3252-S Chr10 6921967 6921967 0 0 Insertion 1 downstream_gene_variant HET FN3252-S Chr11 15311816 Chr3 27255702 0 Translocation 0 LOC_Os03g47940 GDSL-like lipase/acylhydrolase, putative, expressed FN3252-S Chr11 16027391 16027391 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os11g27850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3252-S Chr11 23035456 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr11 3710485 3710492 0 0 Deletion 7 INTERGENIC HET FN3252-S Chr12 12908864 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr12 13356589 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr12 16686031 16686031 0 0 Insertion 20 downstream_gene_variant HET FN3252-S Chr12 17721754 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g29700 retrotransposon protein, putative, unclassified, expressed FN3252-S Chr12 19002006 19002008 0 0 Deletion 2 upstream_gene_variant HET FN3252-S Chr12 20370163 20370197 0 0 Deletion 34 INTERGENIC HET FN3252-S Chr2 1505931 1505931 0 0 Insertion 10 upstream_gene_variant HET FN3252-S Chr2 16439674 16439675 0 0 Deletion 1 upstream_gene_variant HET FN3252-S Chr2 17799163 17799163 0 0 Insertion 1 frameshift_variant HET LOC_Os02g29950 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3252-S Chr2 26112580 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr2 26192053 26192074 0 0 Deletion 21 CODON_DELETION HET LOC_Os02g43400 retrotransposon protein, putative, unclassified, expressed FN3252-S Chr2 27649584 27649585 0 0 Deletion 1 upstream_gene_variant HET FN3252-S Chr2 27792546 27792546 0 0 Insertion 2 downstream_gene_variant HET FN3252-S Chr2 31904650 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr2 6598627 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr3 17158642 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3252-S Chr3 21160586 21160593 0 0 Deletion 7 INTERGENIC HET FN3252-S Chr3 28065548 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr3 35921169 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr3 5568561 5568562 0 0 Deletion 1 INTRON HET FN3252-S Chr3 6035796 6035803 0 0 Deletion 7 INTERGENIC HET FN3252-S Chr3 7069611 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3252-S Chr4 1104389 1104390 0 0 Deletion 1 upstream_gene_variant HET FN3252-S Chr4 13798777 13798957 0 0 Inversion 180 FN3252-S Chr4 17553065 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3252-S Chr4 1927135 1927138 0 0 Deletion 3 INTERGENIC HOMO FN3252-S Chr4 28075367 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr4 29060538 29060548 0 0 Deletion 10 INTERGENIC HET FN3252-S Chr4 33093238 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr4 8164544 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g14560 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3252-S Chr5 1938948 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr5 962219 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3252-S Chr6 226631 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3252-S Chr6 24925476 24925477 0 0 Deletion 1 upstream_gene_variant HET FN3252-S Chr6 29331621 29331624 0 0 Deletion 3 INTERGENIC HET FN3252-S Chr6 3138918 3138922 0 0 Deletion 4 INTERGENIC HET FN3252-S Chr6 5841001 5882000 0 0 Deletion 40999 LOC_Os06g11150 DUF1645 domain containing protein, putative, expressed FN3252-S Chr6 5841001 5882000 0 0 Deletion 40999 LOC_Os06g11160 expressed protein FN3252-S Chr6 5841001 5882000 0 0 Deletion 40999 LOC_Os06g11170 formin-binding protein-related, putative, expressed FN3252-S Chr6 5841001 5882000 0 0 Deletion 40999 LOC_Os06g11180 OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed FN3252-S Chr6 5841001 5882000 0 0 Deletion 40999 LOC_Os06g11190 OsPOP13 - Putative Prolyl Oligopeptidase homologue, expressed FN3252-S Chr6 5841001 5882000 0 0 Deletion 40999 LOC_Os06g11200 12-oxophytodienoate reductase, putative, expressed FN3252-S Chr6 5841001 5882000 0 0 Deletion 40999 LOC_Os06g11240 12-oxophytodienoate reductase, putative, expressed FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11260 12-oxophytodienoate reductase 2, putative, expressed FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11270 anthocyanidin 3-O-glucosyltransferase, putative, expressed FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11280 12-oxophytodienoate reductase, putative, expressed FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11290 12-oxophytodienoate reductase, putative, expressed FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11300 CRR4, putative, expressed FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11304 expressed protein FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11308 hypothetical protein FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11310 plastocyanin-like domain containing protein, putative, expressed FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11320 peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g11330 OsMADS55 - MADS-box family gene with MIKCc type-box, expressed FN3252-S Chr6 5895001 5959000 0 0 Deletion 63999 LOC_Os06g13000 ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed FN3252-S Chr6 6358506 6358539 0 0 Deletion 33 CODON_DELETION HET LOC_Os06g11940 dehydration-responsive element binding protein, putative, expressed FN3252-S Chr7 135153 T-A 0 0 Single Base Substitution 0 INTRON HET FN3252-S Chr7 19589071 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr7 21733076 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr7 27227738 27227738 0 0 Insertion 1 downstream_gene_variant HET FN3252-S Chr7 28209227 28596970 0 0 Inversion 387743 LOC_Os07g47870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3252-S Chr7 28209257 28907222 0 0 Inversion 697965 LOC_Os07g48360 helicase conserved C-terminal domain containing protein, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g47920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g47930 retrotransposon protein, putative, Ty3-gypsy subclass FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g47940 expressed protein FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g47950 expressed protein FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g47960 basic helix-loop-helix domain containing protein, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g47970 expressed protein FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g47990 peroxidase precursor, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48000 retrotransposon protein, putative, unclassified, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48010 peroxidase precursor, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48020 peroxidase precursor, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48030 peroxidase precursor, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48040 peroxidase precursor, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48050 peroxidase precursor, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48060 peroxidase precursor, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48070 conserved hypothetical protein FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48080 expressed protein FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48090 CAMK_KIN1/SNF1/Nim1_like.30 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48100 CAMK_KIN1/SNF1/Nim1_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48110 expressed protein FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48120 expressed protein FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48130 potassium transporter, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48140 ATOFP17/OFP17, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48150 DUF623 domain containing protein, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48160 alpha-galactosidase precursor, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48170 nucleotidyltransferase, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48180 bZIP transcription factor domain containing protein, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48190 expressed protein FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48200 B3 DNA binding domain containing protein, putative, expressed FN3252-S Chr7 28614001 28793000 0 0 Deletion 178999 LOC_Os07g48229 vacuolar-sorting receptor precursor, putative, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48244 ubiquinol-cytochrome c reductase complex 6.7 kDa protein, putative, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48260 WRKY47, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48270 helicase conserved C-terminal domain containing protein, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48280 expressed protein FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48290 AGC_AGC_other_RS6K_like.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48300 eukaryotic translation initiation factor 2 subunit beta, putative, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48310 inactive receptor kinase At2g26730 precursor, putative, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48320 HAD superfamily phosphatase, putative, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48330 cytochrome P450, putative, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48340 OsCML24 - Calmodulin-related calcium sensor protein, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48350 structural constituent of ribosome, putative, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48360 helicase conserved C-terminal domain containing protein, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os07g48370 glycosyl transferase, family 8, putative, expressed FN3252-S Chr7 28803001 28909000 0 0 Deletion 105999 LOC_Os08g06060 CGMC_MAPKCMGC_2_ERK.13 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed FN3252-S Chr7 29086688 29086689 0 0 Deletion 1 upstream_gene_variant HET FN3252-S Chr7 29565442 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr7 4839500 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g09230 retrotransposon protein, putative, unclassified, expressed FN3252-S Chr7 7179441 7179441 0 0 Insertion 2 INTERGENIC HET FN3252-S Chr8 13754870 13754875 0 0 Deletion 5 INTRON HET FN3252-S Chr8 18696966 18696991 0 0 Deletion 25 INTERGENIC HET FN3252-S Chr8 20767372 20767372 0 0 Insertion 1 upstream_gene_variant HET FN3252-S Chr8 2938704 A-C 0 0 Single Base Substitution 0 INTRON HET FN3252-S Chr8 3125102 3125102 0 0 Insertion 2 INTRON HET FN3252-S Chr8 8774924 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3252-S Chr9 1610261 Chr6 20279832 0 Translocation 0 FN3252-S Chr9 17388407 17388414 0 0 Deletion 7 FRAME_SHIFT HOMO LOC_Os09g28570 zinc-binding alcohol dehydrogenase domain-containing protein 2, putative, expressed FN3252-S Chr9 4875068 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO