FN3253-S Chr1 14280361 14280371 0 0 Deletion 10 INTERGENIC HOMO FN3253-S Chr1 16316277 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr1 26563573 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3253-S Chr1 26819903 26819915 0 0 Deletion 12 INTERGENIC HOMO FN3253-S Chr1 41322729 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr1 6270151 6270170 0 0 Deletion 19 INTRON HOMO FN3253-S Chr10 13981781 13981801 0 0 Deletion 20 INTERGENIC HOMO FN3253-S Chr10 18716706 18716711 0 0 Deletion 5 INTERGENIC HET FN3253-S Chr10 2089659 2089662 0 0 Deletion 3 INTRON HOMO FN3253-S Chr11 15545622 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr11 16992216 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g29300 expressed protein FN3253-S Chr11 20284298 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr11 2097945 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3253-S Chr11 21760683 21760686 0 0 Deletion 3 INTERGENIC HET FN3253-S Chr11 22237172 22237189 0 0 Deletion 17 INTERGENIC HET FN3253-S Chr11 22363054 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr11 26698918 26698919 0 0 Deletion 1 upstream_gene_variant HET FN3253-S Chr11 26817301 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr11 9987199 9987199 0 0 Insertion 1 upstream_gene_variant HET FN3253-S Chr12 13848988 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr12 21241887 T-C 0 0 Single Base Substitution 0 INTRON HET FN3253-S Chr12 24078426 G-T 0 0 Single Base Substitution 0 INTRON HET FN3253-S Chr12 4140902 4140903 0 0 Deletion 1 INTERGENIC HOMO FN3253-S Chr12 4711779 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3253-S Chr2 13386087 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g22410 retrotransposon protein, putative, unclassified, expressed FN3253-S Chr2 30159574 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g49360 RNA methyltransferase domain-containing protein 2, putative, expressed FN3253-S Chr2 32398787 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr2 35734030 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g58430 transposon protein, putative, unclassified, expressed FN3253-S Chr3 10710998 10710999 0 0 Deletion 1 INTRON HET FN3253-S Chr3 10848548 10848549 0 0 Deletion 1 UTR_5_PRIME HET FN3253-S Chr3 36204771 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g64070 uncharacterized protein PA4923, putative, expressed FN3253-S Chr4 10517118 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr4 13561004 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3253-S Chr5 12270422 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3253-S Chr5 194174 194186 0 0 Deletion 12 INTERGENIC HET FN3253-S Chr6 12899884 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr6 14038562 14038563 0 0 Deletion 1 downstream_gene_variant HET FN3253-S Chr6 15337485 15337486 0 0 Deletion 1 INTRON HET FN3253-S Chr6 15810741 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3253-S Chr6 1623801 1623811 0 0 Deletion 10 INTERGENIC HOMO FN3253-S Chr6 21466097 21466098 0 0 Deletion 1 upstream_gene_variant HET FN3253-S Chr6 28574769 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr6 2892028 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3253-S Chr6 7423159 7423159 0 0 Insertion 1 upstream_gene_variant HET FN3253-S Chr6 7457203 7457203 0 0 Insertion 1 upstream_gene_variant HET FN3253-S Chr7 15527973 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g26840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3253-S Chr7 15527974 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g26840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3253-S Chr7 23156472 23156473 0 0 Deletion 1 UTR_5_PRIME HET FN3253-S Chr7 23726717 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr7 24233367 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr7 25355082 25355100 0 0 Deletion 18 INTERGENIC HET FN3253-S Chr7 26283700 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr7 7187008 7187021 0 0 Deletion 13 INTERGENIC HOMO FN3253-S Chr8 17034909 17034917 0 0 Deletion 8 FRAME_SHIFT HOMO LOC_Os08g27950 expressed protein FN3253-S Chr8 17856001 17866000 0 0 Deletion 9999 LOC_Os08g29160 5-AMP-activated protein kinase beta-1 subunit-related, putative, expressed FN3253-S Chr8 17856001 17866000 0 0 Deletion 9999 LOC_Os08g29170 dehydrogenase, putative, expressed FN3253-S Chr8 17856001 17866000 0 0 Deletion 9999 LOC_Os08g30520 plant protein of unknown function domain containing protein, expressed FN3253-S Chr8 24762759 24762761 0 0 Deletion 2 UTR_3_PRIME HOMO FN3253-S Chr8 25006367 25006368 0 0 Deletion 1 INTERGENIC HOMO FN3253-S Chr8 467156 467186 0 0 Deletion 30 upstream_gene_variant HET FN3253-S Chr8 6385387 6385387 0 0 Insertion 1 downstream_gene_variant HET FN3253-S Chr9 11555173 11555173 0 0 Insertion 1 frameshift_variant HET LOC_Os09g19310 retrotransposon protein, putative, unclassified, expressed FN3253-S Chr9 13085598 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3253-S Chr9 15461752 Chr3 8299083 0 Translocation 0 FN3253-S Chr9 15462987 Chr3 8299071 0 Translocation 0 FN3253-S Chr9 15536793 Chr4 33688938 0 Translocation 0 FN3253-S Chr9 15537146 Chr4 33688938 0 Translocation 0 FN3253-S Chr9 17554980 17554993 0 0 Deletion 13 INTERGENIC HET FN3253-S Chr9 20638453 G-A 0 0 Single Base Substitution 0 INTRON HET FN3253-S Chr9 3643453 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3253-S Chr9 8355839 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3253-S Chr9 8595496 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g14530 hAT dimerisation domain-containing protein, putative FN3253-S Chr9 9715269 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g15900 retrotransposon protein, putative, unclassified, expressed