FN3254-S Chr1 12956806 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g23020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3254-S Chr1 21012749 21012753 0 0 Deletion 4 FRAME_SHIFT HET LOC_Os01g37580 retrotransposon protein, putative, unclassified, expressed FN3254-S Chr1 2166223 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr1 2194218 2194218 0 0 Insertion 1 upstream_gene_variant HET FN3254-S Chr1 24138882 24138884 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os01g42460 BAH domain containing protein, expressed FN3254-S Chr1 26045433 26045442 0 0 Deletion 9 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os01g45860 GRAS family transcription factor domain containing protein, expressed FN3254-S Chr1 28977159 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN3254-S Chr1 32529246 32529247 0 0 Deletion 1 downstream_gene_variant HET FN3254-S Chr1 33110204 33110205 0 0 Deletion 1 upstream_gene_variant HET FN3254-S Chr1 34096425 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr1 39782554 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3254-S Chr1 6998475 6998493 0 0 Deletion 18 INTERGENIC HET FN3254-S Chr1 6998513 6998531 0 0 Deletion 18 INTERGENIC HET FN3254-S Chr10 10276183 C-T 0 0 Single Base Substitution 0 INTRON HET FN3254-S Chr10 10975069 10975070 0 0 Deletion 1 splice_region_variant&intron_variant HET FN3254-S Chr10 3192055 3192071 0 0 Deletion 16 INTERGENIC HET FN3254-S Chr10 5533363 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr10 6430721 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr10 7847849 7847850 0 0 Deletion 1 INTERGENIC HET FN3254-S Chr11 11063990 11063991 0 0 Deletion 1 INTRON HET FN3254-S Chr11 13331748 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr11 23801496 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr11 26623518 26623520 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os11g44050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3254-S Chr12 10109022 G-A 0 0 Single Base Substitution 0 INTRON HET FN3254-S Chr12 15182315 Chr8 22037707 0 Translocation 0 FN3254-S Chr12 15182316 Chr8 22040097 0 Translocation 0 FN3254-S Chr12 15748700 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr12 5078095 5971038 0 0 Inversion 892943 FN3254-S Chr12 5078108 5533959 0 0 Inversion 455851 LOC_Os12g10440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3254-S Chr12 9194535 9194558 0 0 Deletion 23 frameshift_variant HET LOC_Os12g16100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3254-S Chr2 32109082 32109083 0 0 Deletion 1 INTERGENIC HET FN3254-S Chr2 3704501 3704505 0 0 Deletion 4 FRAME_SHIFT HOMO LOC_Os02g07200 protein-O-fucosyltransferase 1, putative, expressed FN3254-S Chr2 3959736 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3254-S Chr2 6193169 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g11940 sterol glucosyltransferase, putative, expressed FN3254-S Chr3 10718847 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr3 12779018 12779018 0 0 Insertion 10 frameshift_variant HET LOC_Os03g22300 retrotransposon protein, putative, unclassified, expressed FN3254-S Chr3 15386227 15477295 0 0 Inversion 91068 FN3254-S Chr3 2018606 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr3 25223197 Chr1 23675850 0 Translocation 0 LOC_Os01g41810 cytochrome P450 72A1, putative, expressed FN3254-S Chr3 29497237 29497238 0 0 Deletion 1 upstream_gene_variant HET FN3254-S Chr3 31039527 31039528 0 0 Deletion 1 INTRON HET FN3254-S Chr3 31127909 31127909 0 0 Insertion 3 INTERGENIC HET FN3254-S Chr3 35059793 35059805 0 0 Deletion 12 INTERGENIC HET FN3254-S Chr4 12837813 12837817 0 0 Deletion 4 INTERGENIC HOMO FN3254-S Chr4 15478142 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3254-S Chr4 15692602 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr4 23411490 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3254-S Chr4 3985879 3985879 0 0 Insertion 1 upstream_gene_variant HET FN3254-S Chr4 6778453 6778454 0 0 Deletion 1 INTERGENIC HET FN3254-S Chr5 11615073 11615074 0 0 Deletion 1 INTERGENIC HET FN3254-S Chr5 1207001 1225000 0 0 Deletion 17999 LOC_Os05g03090 transposon protein, putative, unclassified, expressed FN3254-S Chr5 1207001 1225000 0 0 Deletion 17999 LOC_Os05g03100 HECT-domain domain containing protein, expressed FN3254-S Chr5 1207001 1225000 0 0 Deletion 17999 LOC_Os05g10970 retrotransposon protein, putative, unclassified FN3254-S Chr5 12141791 12141798 0 0 Deletion 7 INTRON HET FN3254-S Chr5 22608408 22608408 0 0 Insertion 8 upstream_gene_variant HET FN3254-S Chr5 6819490 6819492 0 0 Deletion 2 INTERGENIC HET FN3254-S Chr6 13163737 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3254-S Chr6 21939586 21939593 0 0 Deletion 7 INTRON HET FN3254-S Chr6 23516461 Chr5 5212182 0 Translocation 0 FN3254-S Chr6 23706261 23706267 0 0 Deletion 6 INTRON HET FN3254-S Chr6 24766837 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr7 26326654 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3254-S Chr7 6216296 6216302 0 0 Deletion 6 INTERGENIC HET FN3254-S Chr7 9593510 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3254-S Chr8 1000603 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3254-S Chr8 9925883 9925954 0 0 Deletion 71 upstream_gene_variant HET FN3254-S Chr9 17659001 17693000 0 0 Deletion 33999 LOC_Os09g29090 retrotransposon protein, putative, unclassified, expressed FN3254-S Chr9 17659001 17693000 0 0 Deletion 33999 LOC_Os09g29100 cyclin, putative, expressed FN3254-S Chr9 17659001 17693000 0 0 Deletion 33999 LOC_Os09g29110 expressed protein FN3254-S Chr9 17659001 17693000 0 0 Deletion 33999 LOC_Os09g29790 PPR repeat domain containing protein, putative, expressed FN3254-S Chr9 21275782 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g36890 hydroxyproline-rich glycoprotein family protein, putative, expressed FN3254-S Chr9 8226704 Chr2 11631160 0 Translocation 0