FN3255-S Chr1 14258265 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3255-S Chr1 29554082 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr1 35661897 35661903 0 0 Deletion 6 INTRON HET FN3255-S Chr1 39328441 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr1 7978743 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr10 1177952 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3255-S Chr10 12243258 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3255-S Chr10 12354746 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr10 13408578 13408578 0 0 Insertion 6 upstream_gene_variant HET FN3255-S Chr10 14690929 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr10 497425 497431 0 0 Deletion 6 INTERGENIC HOMO FN3255-S Chr10 5040174 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3255-S Chr10 581616 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr10 8076706 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3255-S Chr10 9122881 A-C 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr11 10502003 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr11 11140601 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr11 11746296 G-A 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr11 1204964 1204999 0 0 Deletion 35 INTRON HOMO FN3255-S Chr11 16015440 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr11 21769306 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr11 23896286 24054035 0 0 Inversion 157749 LOC_Os11g40350 expressed protein FN3255-S Chr11 23896314 24054041 0 0 Inversion 157727 LOC_Os11g40350 expressed protein FN3255-S Chr11 23906724 T-A 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr11 25043961 25044183 0 0 Deletion 222 downstream_gene_variant HET FN3255-S Chr12 11096290 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr12 15598447 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr12 18272412 18272412 0 0 Insertion 1 upstream_gene_variant HET FN3255-S Chr12 21841571 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g35840 transposon protein, putative, CACTA, En/Spm sub-class FN3255-S Chr2 10554914 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g18180 ATP-binding cassette sub-family E member 1, putative, expressed FN3255-S Chr2 10609064 G-T 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr2 11478370 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g19640 IQ calmodulin-binding motif family protein, putative, expressed FN3255-S Chr2 14138355 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr2 17148001 17165000 0 0 Deletion 16999 LOC_Os02g28980 peptidyl-prolyl isomerase, putative, expressed FN3255-S Chr2 17148001 17165000 0 0 Deletion 16999 LOC_Os02g28990 expressed protein FN3255-S Chr2 17148001 17165000 0 0 Deletion 16999 LOC_Os02g30180 ZOS2-07 - C2H2 zinc finger protein, expressed FN3255-S Chr2 18325912 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g30750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3255-S Chr2 19940927 19940928 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os02g33530 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr2 20212545 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3255-S Chr2 20405050 20405050 0 0 Insertion 16 downstream_gene_variant HET FN3255-S Chr2 20696147 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr2 29835722 29835723 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os02g48740 fimbrin-like protein 2, putative, expressed FN3255-S Chr2 30040025 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr2 33552211 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g54790 expressed protein FN3255-S Chr2 33552212 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3255-S Chr2 5879219 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr2 8745235 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3255-S Chr3 12313908 12313910 0 0 Deletion 2 INTERGENIC HET FN3255-S Chr3 12395140 G-A 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32730 retrotransposon protein, putative, unclassified FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32749 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32780 expressed protein FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32790 expressed protein FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32810 retrotransposon, putative, centromere-specific, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32820 retrotransposon protein, putative, Ty3-gypsy subclass FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32830 hypothetical protein FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32840 retrotransposon protein, putative, unclassified FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32850 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32860 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32870 retrotransposon protein, putative, unclassified FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32880 retrotransposon protein, putative, unclassified FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32890 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32900 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32910 retrotransposon protein, putative, unclassified FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32920 retrotransposon protein, putative, Ty3-gypsy subclass FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32940 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32970 retrotransposon protein, putative, unclassified FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32980 expressed protein FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g32990 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g33000 retrotransposon, putative, centromere-specific FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g33010 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g33012 WRKY81, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g33030 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g33040 retrotransposon protein, putative, unclassified FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g33042 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g33044 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g33050 retrotransposon protein, putative, unclassified FN3255-S Chr3 18742001 18916000 0 0 Deletion 173999 LOC_Os03g39670 retrotransposon protein, putative, unclassified FN3255-S Chr3 23108387 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr3 23481022 23481022 0 0 Insertion 2 upstream_gene_variant HET FN3255-S Chr3 25527866 25527866 0 0 Insertion 20 upstream_gene_variant HET FN3255-S Chr3 31332151 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr3 32937915 32937916 0 0 Deletion 1 upstream_gene_variant HET FN3255-S Chr3 34508821 C-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3255-S Chr3 35483191 A-G 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr4 10267264 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr4 12788464 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr4 13138497 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr4 15257312 C-T 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr4 2185074 2185077 0 0 Deletion 3 upstream_gene_variant HET FN3255-S Chr4 25745769 C-A 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr4 27676175 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3255-S Chr4 29964377 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr4 31894888 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr4 32468166 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr4 32943656 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr4 33037971 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g55530 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr4 35061514 35336794 0 0 Inversion 275280 FN3255-S Chr4 35061523 35336800 0 0 Inversion 275277 FN3255-S Chr4 6001509 Chr2 16964432 0 Translocation 0 FN3255-S Chr4 8947719 8947723 0 0 Deletion 4 INTERGENIC HET FN3255-S Chr5 11988951 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g20430 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr5 1537896 1669059 0 0 Inversion 131163 LOC_Os05g03610 phospholipase C, putative, expressed FN3255-S Chr5 1537896 1669059 0 0 Inversion 131163 LOC_Os05g03770 expressed protein FN3255-S Chr5 1538675 1693135 0 0 Inversion 154460 FN3255-S Chr5 16460986 16460987 0 0 Deletion 1 INTERGENIC HOMO FN3255-S Chr5 18488574 18488583 0 0 Deletion 9 CODON_DELETION HOMO LOC_Os05g31740 cytochrome P450 86A2, putative, expressed FN3255-S Chr5 434157 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3255-S Chr5 7586624 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g13690 expressed protein FN3255-S Chr6 12762671 A-G 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr6 14177545 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr6 14520551 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr6 2260270 2260302 0 0 Deletion 32 INTRON HOMO FN3255-S Chr6 22976226 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr6 25435764 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3255-S Chr6 2925663 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3255-S Chr6 640321 T-C 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3255-S Chr6 8746687 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr6 973127 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3255-S Chr7 11489776 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g19420 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr7 11874894 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr7 14544001 14565000 0 0 Deletion 20999 LOC_Os07g27834 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3255-S Chr7 15977481 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g27420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3255-S Chr7 21128070 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr7 26221714 26221714 0 0 Insertion 1 upstream_gene_variant HET FN3255-S Chr7 29019402 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr7 3320537 A-T 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr7 9969733 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr8 12006856 12006858 0 0 Deletion 2 INTERGENIC HET FN3255-S Chr8 21324471 21324472 0 0 Deletion 1 upstream_gene_variant HET FN3255-S Chr8 3985460 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3255-S Chr8 9574971 9574972 0 0 Deletion 1 intergenic_region HET FN3255-S Chr9 22587997 22588075 0 0 Deletion 78 disruptive_inframe_deletion HET LOC_Os09g39300 retrotransposon protein, putative, unclassified, expressed FN3255-S Chr9 3332556 3333154 0 0 Deletion 598 upstream_gene_variant HET FN3255-S Chr9 4626694 G-A 0 0 Single Base Substitution 0 INTRON HET FN3255-S Chr9 8801443 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g14790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3255-S Chr9 9676857 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO