FN3257-S Chr1 23595876 23595892 0 0 Deletion 16 frameshift_variant HET LOC_Os01g41690 transposon protein, putative, unclassified, expressed FN3257-S Chr1 29866892 29866894 0 0 Deletion 2 upstream_gene_variant HET FN3257-S Chr1 31813747 31813748 0 0 Deletion 1 INTRON HOMO FN3257-S Chr1 33111001 33137000 0 0 Deletion 25999 LOC_Os01g57310 rp1, putative, expressed FN3257-S Chr1 33111001 33137000 0 0 Deletion 25999 LOC_Os01g57324 expressed protein FN3257-S Chr1 33111001 33137000 0 0 Deletion 25999 LOC_Os01g58080 membrane-associated salt-inducible protein, putative, expressed FN3257-S Chr10 10209160 C-T 0 0 Single Base Substitution 0 INTRON HET FN3257-S Chr10 18738456 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g35110 alpha-galactosidase precursor, putative, expressed FN3257-S Chr10 18931474 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr10 18931475 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr10 3635705 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g06980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3257-S Chr10 9905194 9905195 0 0 Deletion 1 INTERGENIC HET FN3257-S Chr11 15163362 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3257-S Chr11 18112960 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g31110 expressed protein FN3257-S Chr11 23833239 Chr4 13589833 0 Translocation 0 FN3257-S Chr11 26091651 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr11 26486945 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr11 5420767 5420767 0 0 Insertion 6 CODON_INSERTION HET LOC_Os11g10070 transcriptional corepressor SEUSS, putative, expressed FN3257-S Chr11 7583116 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3257-S Chr12 11105918 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3257-S Chr12 12935001 12952000 0 0 Deletion 16999 LOC_Os12g22920 expressed protein FN3257-S Chr12 12935001 12952000 0 0 Deletion 16999 LOC_Os12g24640 expressed protein FN3257-S Chr12 15455835 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3257-S Chr12 15953891 Chr9 1340903 0 Translocation 0 FN3257-S Chr12 17601624 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3257-S Chr12 18254584 18254584 0 0 Insertion 86 upstream_gene_variant HET FN3257-S Chr12 19146879 19146880 0 0 Deletion 1 INTERGENIC HOMO FN3257-S Chr12 19377016 Chr7 11249839 0 Translocation 0 FN3257-S Chr12 23760671 23760671 0 0 Insertion 72 upstream_gene_variant HET FN3257-S Chr12 25136047 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g40610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3257-S Chr12 25185069 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g40680 retrotransposon protein, putative, unclassified, expressed FN3257-S Chr12 3407001 3439000 0 0 Deletion 31999 LOC_Os12g06990 expressed protein FN3257-S Chr12 3407001 3439000 0 0 Deletion 31999 LOC_Os12g07000 retrotransposon protein, putative, Ty1-copia subclass FN3257-S Chr12 3407001 3439000 0 0 Deletion 31999 LOC_Os12g07010 ribosomal protein L3, putative, expressed FN3257-S Chr12 3407001 3439000 0 0 Deletion 31999 LOC_Os12g07020 5-formyltetrahydrofolate cyclo-ligase, putative, expressed FN3257-S Chr12 3407001 3439000 0 0 Deletion 31999 LOC_Os12g07030 expressed protein FN3257-S Chr12 3407001 3439000 0 0 Deletion 31999 LOC_Os12g09810 retrotransposon protein, putative, unclassified FN3257-S Chr2 23649327 23649327 0 0 Insertion 2 upstream_gene_variant HET FN3257-S Chr3 21111903 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN3257-S Chr3 2266467 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g04750 60S ribosomal protein L21-2, putative, expressed FN3257-S Chr3 2454206 2454206 0 0 Insertion 2 INTRON HET FN3257-S Chr3 34650117 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3257-S Chr3 7465614 7465622 0 0 Deletion 8 upstream_gene_variant HET FN3257-S Chr3 9528342 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3257-S Chr4 1000 1000 0 0 Insertion 74 upstream_gene_variant HET FN3257-S Chr4 20884342 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g34490 nodulin, putative, expressed FN3257-S Chr4 21161593 21161596 0 0 Deletion 3 INTERGENIC HOMO FN3257-S Chr4 3803696 3803698 0 0 Deletion 2 upstream_gene_variant HET FN3257-S Chr4 4968701 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3257-S Chr5 13787221 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr5 14642086 14642087 0 0 Deletion 1 INTERGENIC HET FN3257-S Chr5 1491173 1491179 0 0 Deletion 6 INTERGENIC HET FN3257-S Chr5 14974906 14974915 0 0 Deletion 9 INTERGENIC HET FN3257-S Chr5 19716798 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr5 20259920 20259922 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os05g34220 vrga1, putative, expressed FN3257-S Chr5 6689918 6689919 0 0 Deletion 1 INTRON HET FN3257-S Chr6 10490064 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr6 10569318 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr6 10948391 10948392 0 0 Deletion 1 frameshift_variant HET LOC_Os06g19240 retrotransposon protein, putative, Ty3-gypsy subclass FN3257-S Chr6 2849103 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g06150 zinc finger, C3HC4 type domain containing protein, expressed FN3257-S Chr6 28714001 28714002 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os06g47380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3257-S Chr7 11832717 11832718 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os07g20490 retrotransposon protein, putative, unclassified, expressed FN3257-S Chr7 15853126 15853136 0 0 Deletion 10 FRAME_SHIFT HET LOC_Os07g27280 expressed protein FN3257-S Chr7 17184444 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr7 20071193 20071194 0 0 Deletion 1 downstream_gene_variant HET FN3257-S Chr7 4436455 G-A 0 0 Single Base Substitution 0 INTRON HET FN3257-S Chr8 17494234 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g28630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3257-S Chr8 3664491 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr9 22167462 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr9 3843609 3843609 0 0 Insertion 2 INTERGENIC HET FN3257-S Chr9 6754687 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr9 7424734 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3257-S Chr9 9749590 Chr5 18014660 0 Translocation 0