FN3261-S Chr1 12453004 12453004 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr1 1312010 1312015 0 0 Deletion 5 upstream_gene_variant HET FN3261-S Chr1 13967298 13967299 0 0 Deletion 1 intron_variant HET FN3261-S Chr1 14101000 14101002 0 0 Deletion 2 upstream_gene_variant HET FN3261-S Chr1 19524118 19524121 0 0 Deletion 3 upstream_gene_variant HET FN3261-S Chr1 20128042 20128043 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr1 20513047 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3261-S Chr1 26180233 26180233 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr1 26935317 26935317 0 0 Insertion 1 intergenic_region HET FN3261-S Chr1 27428083 27428084 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr1 33352658 33352658 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr1 35717122 35717263 0 0 Inversion 141 FN3261-S Chr1 36629159 36629160 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr10 13716809 13716809 0 0 Insertion 5 downstream_gene_variant HET FN3261-S Chr10 14002198 14002198 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr10 14320512 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3261-S Chr10 2278155 2587895 0 0 Inversion 309740 LOC_Os10g05240 OsFBX369 - F-box domain containing protein, expressed FN3261-S Chr10 22811037 22811038 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr10 2761402 2762165 0 0 Inversion 763 FN3261-S Chr10 3459983 C-A 0 0 Single Base Substitution 0 INTRON HET FN3261-S Chr10 39242 Chr2 15410998 0 Translocation 0 LOC_Os10g01030 hypothetical protein FN3261-S Chr10 5149235 Chr4 3713484 0 Translocation 0 FN3261-S Chr10 7080943 7080943 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr10 9660742 9660746 0 0 Deletion 4 upstream_gene_variant HET FN3261-S Chr10 9732271 9732271 0 0 Insertion 2 upstream_gene_variant HET FN3261-S Chr11 10453859 10453863 0 0 Deletion 4 upstream_gene_variant HET FN3261-S Chr11 1072133 C-T 0 0 Single Base Substitution 0 INTRON HET FN3261-S Chr11 13131131 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3261-S Chr11 13149372 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os11g22860 expressed protein FN3261-S Chr11 1393202 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN3261-S Chr11 15088344 Chr7 14214837 0 Translocation 0 FN3261-S Chr11 17987206 17987207 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr11 18032334 Chr4 8324480 0 Translocation 0 FN3261-S Chr11 19416925 19416926 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr11 21758119 G-A 0 0 Single Base Substitution 0 INTRON HET FN3261-S Chr11 22105273 22105273 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr11 22522354 Chr4 30603762 0 Translocation 0 FN3261-S Chr11 25438441 25438444 0 0 Deletion 3 upstream_gene_variant HET FN3261-S Chr11 27012178 27012181 0 0 Deletion 3 inframe_deletion HET LOC_Os11g44670 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3261-S Chr11 27121482 27121482 0 0 Insertion 3 upstream_gene_variant HET FN3261-S Chr11 28112598 28112611 0 0 Deletion 13 frameshift_variant HET LOC_Os11g46840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3261-S Chr11 28680257 Chr8 20028566 0 Translocation 0 FN3261-S Chr11 3249825 3249825 0 0 Insertion 2 3_prime_UTR_variant HET FN3261-S Chr11 515394 Chr5 10473700 0 Translocation 0 LOC_Os11g01960 retrotransposon protein, putative, Ty3-gypsy subclass FN3261-S Chr11 5536968 5536968 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr11 7523454 7523454 0 0 Insertion 67 intron_variant HET FN3261-S Chr11 9981486 9981486 0 0 Insertion 1 intron_variant HET FN3261-S Chr12 12473933 Chr9 5558926 0 Translocation 0 FN3261-S Chr12 13902250 13902250 0 0 Insertion 1 downstream_gene_variant HET FN3261-S Chr12 14044188 14044188 0 0 Insertion 1 frameshift_variant HET LOC_Os12g24555 transposon protein, putative, unclassified, expressed FN3261-S Chr12 14971539 14971540 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr12 16030037 16030037 0 0 Insertion 19 upstream_gene_variant HET FN3261-S Chr12 16493847 Chr7 13266632 0 Translocation 0 FN3261-S Chr12 17193510 17193513 0 0 Deletion 3 upstream_gene_variant HET FN3261-S Chr12 19092048 Chr1 24366466 0 Translocation 0 FN3261-S Chr12 19501230 19501232 0 0 Deletion 2 upstream_gene_variant HET FN3261-S Chr12 21110106 21110108 0 0 Deletion 2 downstream_gene_variant HET FN3261-S Chr12 21392748 21392749 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr12 21934875 21934876 0 0 Deletion 1 intergenic_region HET FN3261-S Chr12 24905924 24905925 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr12 26092304 Chr1 17722027 0 Translocation 0 FN3261-S Chr12 26145584 Chr11 17687180 0 Translocation 0 FN3261-S Chr12 4386657 Chr2 15420855 0 Translocation 0 LOC_Os02g26250 retrotransposon protein, putative, unclassified FN3261-S Chr12 7608984 7608984 0 0 Insertion 5 upstream_gene_variant HET FN3261-S Chr12 8059766 8059769 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os12g14190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3261-S Chr12 9228999 9229000 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr12 9878189 Chr10 327716 0 Translocation 0 FN3261-S Chr2 11161001 11172000 0 0 Deletion 10999 LOC_Os02g19150 AAA family ATPase, putative, expressed FN3261-S Chr2 11161001 11172000 0 0 Deletion 10999 LOC_Os02g25300 expressed protein FN3261-S Chr2 15605457 Chr1 17178521 0 Translocation 0 FN3261-S Chr2 17653375 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3261-S Chr2 18080008 Chr1 8155805 0 Translocation 0 FN3261-S Chr2 25641751 25641751 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr2 25988779 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3261-S Chr2 27574813 27574813 0 0 Insertion 1 downstream_gene_variant HET FN3261-S Chr2 29847209 29847280 0 0 Deletion 71 upstream_gene_variant HET FN3261-S Chr2 32207793 32207795 0 0 Deletion 2 upstream_gene_variant HET FN3261-S Chr2 32674196 32674197 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr2 3898317 3898317 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr3 12574046 12574047 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr3 13767081 Chr1 2427141 0 Translocation 0 FN3261-S Chr3 17318930 17318930 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr3 17493340 17493341 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr3 18172564 18172564 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr3 26111523 26111524 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr4 10182469 10182469 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr4 14274743 15016821 0 0 Inversion 742078 FN3261-S Chr4 14402346 14402347 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr4 17940263 Chr2 13401459 0 Translocation 0 LOC_Os04g30040 jacalin-like lectin domain containing protein, expressed FN3261-S Chr4 18302967 18302969 0 0 Deletion 2 upstream_gene_variant HET FN3261-S Chr4 20747361 20747361 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr4 20933104 Chr1 17774756 0 Translocation 0 FN3261-S Chr4 21187767 21187768 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr4 2216804 2216805 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr4 2542302 2542303 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr4 2644020 2644021 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr4 26673799 27229996 0 0 Inversion 556197 FN3261-S Chr4 26673812 27230005 0 0 Inversion 556193 FN3261-S Chr4 28446277 28446277 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr4 28683409 28683409 0 0 Insertion 1 intergenic_region HET FN3261-S Chr4 29464001 29483000 0 0 Deletion 18999 LOC_Os04g49370 expressed protein FN3261-S Chr4 29464001 29483000 0 0 Deletion 18999 LOC_Os04g49380 transposon protein, putative, unclassified, expressed FN3261-S Chr4 29464001 29483000 0 0 Deletion 18999 LOC_Os04g49394 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3261-S Chr4 30674010 30674010 0 0 Insertion 13 upstream_gene_variant HET FN3261-S Chr4 31585635 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3261-S Chr4 33069424 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3261-S Chr4 7294490 7294491 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr5 10383170 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3261-S Chr5 13871527 13871528 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr5 14289905 14289906 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr5 14776320 14776321 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr5 15265280 Chr1 18684006 0 Translocation 0 FN3261-S Chr5 15397923 15397923 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr5 18098251 18098252 0 0 Deletion 1 frameshift_variant HET LOC_Os05g31130 retrotransposon protein, putative, unclassified, expressed FN3261-S Chr5 18792768 18792768 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr5 19881661 20720514 0 0 Inversion 838853 FN3261-S Chr5 24693868 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3261-S Chr5 25986184 25986184 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr5 28059855 28059856 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr5 28410535 28410540 0 0 Deletion 5 intron_variant HET FN3261-S Chr5 29854690 29854690 0 0 Insertion 1 intergenic_region HET FN3261-S Chr5 4378592 Chr4 14979657 0 Translocation 0 FN3261-S Chr5 4532186 Chr2 15425664 0 Translocation 0 LOC_Os02g26270 retrotransposon protein, putative, unclassified, expressed FN3261-S Chr5 4532186 Chr2 15425664 0 Translocation 0 LOC_Os05g08300 retrotransposon protein, putative, unclassified, expressed FN3261-S Chr5 6397335 6397335 0 0 Insertion 3 downstream_gene_variant HET FN3261-S Chr5 9426915 9426922 0 0 Deletion 7 upstream_gene_variant HET FN3261-S Chr5 9736157 9736157 0 0 Insertion 4 intron_variant HET FN3261-S Chr6 10395375 Chr2 23043795 0 Translocation 0 FN3261-S Chr6 1119287 1119288 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr6 12549471 12549471 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr6 13548800 Chr4 12174816 0 Translocation 0 FN3261-S Chr6 15712154 C-T 0 0 Single Base Substitution 0 INTRON HET FN3261-S Chr6 19275572 Chr5 8800367 0 Translocation 0 FN3261-S Chr6 21244986 21244987 0 0 Deletion 1 intergenic_region HET FN3261-S Chr6 21771964 21771964 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr6 24163428 24163434 0 0 Deletion 6 upstream_gene_variant HET FN3261-S Chr6 24927397 24927410 0 0 Deletion 13 frameshift_variant HET LOC_Os06g41620 retrotransposon protein, putative, unclassified, expressed FN3261-S Chr6 25424212 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3261-S Chr6 25514274 25514275 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr6 5599467 5599467 0 0 Insertion 4 upstream_gene_variant HET FN3261-S Chr6 8875844 Chr1 42197477 0 Translocation 0 FN3261-S Chr7 11146001 11165000 0 0 Deletion 18999 LOC_Os07g18830 retrotransposon protein, putative, Ty3-gypsy subclass FN3261-S Chr7 11146001 11165000 0 0 Deletion 18999 LOC_Os07g18840 transposon protein, putative, unclassified, expressed FN3261-S Chr7 11146001 11165000 0 0 Deletion 18999 LOC_Os07g25450 histone-lysine N-methyltransferase, putative, expressed FN3261-S Chr7 12478972 12478972 0 0 Insertion 2 downstream_gene_variant HET FN3261-S Chr7 14059437 14059442 0 0 Deletion 5 upstream_gene_variant HET FN3261-S Chr7 15132203 15132212 0 0 Deletion 9 upstream_gene_variant HET FN3261-S Chr7 17141775 Chr6 16283287 0 Translocation 0 FN3261-S Chr7 17964354 17964356 0 0 Deletion 2 frameshift_variant HET LOC_Os07g30350 retrotransposon protein, putative, unclassified, expressed FN3261-S Chr7 18301343 18301344 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr7 18301570 18301570 0 0 Insertion 1 upstream_gene_variant HET FN3261-S Chr7 18965856 18965860 0 0 Deletion 4 upstream_gene_variant HET FN3261-S Chr7 22010603 Chr3 8428627 0 Translocation 0 FN3261-S Chr7 22878406 22878457 0 0 Deletion 51 upstream_gene_variant HET FN3261-S Chr7 26597163 26597163 0 0 Insertion 1 downstream_gene_variant HET FN3261-S Chr7 4789449 4789462 0 0 Deletion 13 frameshift_variant HET LOC_Os07g09180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3261-S Chr7 5740076 Chr1 10486710 0 Translocation 0 FN3261-S Chr7 6431611 6431611 0 0 Insertion 6 inframe_insertion HET LOC_Os07g11640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3261-S Chr7 7408651 Chr1 24045261 0 Translocation 0 LOC_Os07g12900 cadmium/zinc-transporting ATPase, putative, expressed FN3261-S Chr7 9874130 9874130 0 0 Insertion 1 frameshift_variant HET LOC_Os07g16810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3261-S Chr8 12481418 12481418 0 0 Insertion 1 downstream_gene_variant HET FN3261-S Chr8 14131390 14131391 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr8 16565370 16565408 0 0 Deletion 38 downstream_gene_variant HET FN3261-S Chr8 16898110 16898110 0 0 Insertion 48 downstream_gene_variant HET FN3261-S Chr8 16899775 16899775 0 0 Insertion 35 downstream_gene_variant HET FN3261-S Chr8 17142123 17142124 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr8 18060585 18060585 0 0 Insertion 4 downstream_gene_variant HET FN3261-S Chr8 19719812 Chr2 27242590 0 Translocation 0 FN3261-S Chr8 21130300 21130300 0 0 Insertion 1 downstream_gene_variant HET FN3261-S Chr8 21734880 21734883 0 0 Deletion 3 inframe_deletion HET LOC_Os08g34590 transposon protein, putative, CACTA, En/Spm sub-class FN3261-S Chr8 2543605 2543605 0 0 Insertion 62 upstream_gene_variant HET FN3261-S Chr8 26704437 26704439 0 0 Deletion 2 upstream_gene_variant HET FN3261-S Chr8 2724643 2724644 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr8 27756945 27756945 0 0 Insertion 2 INTERGENIC HET FN3261-S Chr8 4572575 Chr3 16530378 0 Translocation 0 FN3261-S Chr8 5036828 5036829 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr8 5935232 5935233 0 0 Deletion 1 downstream_gene_variant HET FN3261-S Chr8 6303539 Chr2 9192302 0 Translocation 0 FN3261-S Chr8 8544846 8544854 0 0 Deletion 8 frameshift_variant HET LOC_Os08g14250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3261-S Chr9 10136507 10136508 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr9 10396951 Chr1 8290542 0 Translocation 0 FN3261-S Chr9 1100912 Chr2 2674024 0 Translocation 0 FN3261-S Chr9 19491444 Chr3 33436914 0 Translocation 0 FN3261-S Chr9 19493112 Chr3 33436913 0 Translocation 0 FN3261-S Chr9 22314571 22314571 0 0 Insertion 1 3_prime_UTR_variant HET FN3261-S Chr9 2782644 2782645 0 0 Deletion 1 intergenic_region HET FN3261-S Chr9 319609 319609 0 0 Insertion 2 upstream_gene_variant HET FN3261-S Chr9 4654509 4654510 0 0 Deletion 1 upstream_gene_variant HET FN3261-S Chr9 4861332 4861333 0 0 Deletion 1 frameshift_variant HET LOC_Os09g09090 retrotransposon protein, putative, Ty3-gypsy subclass FN3261-S Chr9 5145805 5145812 0 0 Deletion 7 upstream_gene_variant HET FN3261-S Chr9 5576933 5576933 0 0 Insertion 90 disruptive_inframe_insertion HET LOC_Os09g10240 retrotransposon protein, putative, unclassified, expressed FN3261-S Chr9 6282068 Chr4 5870975 0 Translocation 0 FN3261-S Chr9 7135536 Chr6 11646392 0 Translocation 0 FN3261-S Chr9 8288596 8288634 0 0 Deletion 38 upstream_gene_variant HET FN3261-S Chr9 9371256 Chr6 3931864 0 Translocation 0