FN3263-S Chr1 10985756 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3263-S Chr1 22749028 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr1 22749637 22749638 0 0 Deletion 1 INTERGENIC HET FN3263-S Chr1 30929517 31435102 0 0 Inversion 505585 LOC_Os01g54640 retrotransposon protein, putative, unclassified FN3263-S Chr1 30929528 31761523 0 0 Inversion 831995 FN3263-S Chr1 31327182 31761514 0 0 Inversion 434332 FN3263-S Chr1 31327188 31327739 0 0 Inversion 551 FN3263-S Chr1 32080844 G-A 0 0 Single Base Substitution 0 INTRON HET FN3263-S Chr1 32934332 32934333 0 0 Deletion 1 INTRON HET FN3263-S Chr1 33323751 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr1 33323762 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr1 39798664 T-A 0 0 Single Base Substitution 0 START_GAINED HET FN3263-S Chr1 42622671 A-C 0 0 Single Base Substitution 0 INTRON HET FN3263-S Chr1 8836230 8836264 0 0 Deletion 34 splice_donor_variant&inframe_deletion&splice_region_variant&intron_variant HET LOC_Os01g15709 transferase family protein, putative, expressed FN3263-S Chr10 20763484 20763484 0 0 Insertion 1 upstream_gene_variant HET FN3263-S Chr10 5491082 5491083 0 0 Deletion 1 INTERGENIC HET FN3263-S Chr10 6371448 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr11 11270396 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr11 14061845 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g24650 expressed protein FN3263-S Chr11 15932895 A-C 0 0 Single Base Substitution 0 INTRON HET FN3263-S Chr11 19097742 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3263-S Chr11 23250292 23250303 0 0 Deletion 11 FRAME_SHIFT HOMO LOC_Os11g39050 expressed protein FN3263-S Chr11 23816458 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3263-S Chr11 8275507 8275512 0 0 Deletion 5 INTERGENIC HET FN3263-S Chr12 13507526 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3263-S Chr12 22032871 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr12 26026839 26026841 0 0 Deletion 2 FRAME_SHIFT HET LOC_Os12g41970 lipase class 3 family protein, putative, expressed FN3263-S Chr12 3144309 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr12 3202022 3202034 0 0 Deletion 12 CODON_CHANGE_PLUS_CODON_DELETION HET LOC_Os12g06610 nucleolar complex protein 2, putative, expressed FN3263-S Chr2 13391062 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3263-S Chr2 16948324 16948328 0 0 Deletion 4 upstream_gene_variant HET FN3263-S Chr2 2636899 2636900 0 0 Deletion 1 INTERGENIC HET FN3263-S Chr2 31244506 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3263-S Chr3 20213756 20213757 0 0 Deletion 1 upstream_gene_variant HET FN3263-S Chr3 35019725 T-A 0 0 Single Base Substitution 0 INTRON HET FN3263-S Chr3 35019728 T-G 0 0 Single Base Substitution 0 INTRON HET FN3263-S Chr3 5330457 5330458 0 0 Deletion 1 INTRON HET FN3263-S Chr4 13656803 13656808 0 0 Deletion 5 INTERGENIC HET FN3263-S Chr4 15098265 15098266 0 0 Deletion 1 INTRON HOMO FN3263-S Chr4 1737413 G-A 0 0 Single Base Substitution 0 INTRON HET FN3263-S Chr4 18526251 18526252 0 0 Deletion 1 INTRON HOMO FN3263-S Chr4 28151654 28151654 0 0 Insertion 2 upstream_gene_variant HET FN3263-S Chr4 9865346 9865348 0 0 Deletion 2 frameshift_variant HET LOC_Os04g17940 retrotransposon protein, putative, unclassified, expressed FN3263-S Chr5 20704701 20704701 0 0 Insertion 22 intergenic_region HET FN3263-S Chr5 28575974 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr5 29873966 29873967 0 0 Deletion 1 downstream_gene_variant HET FN3263-S Chr6 21268955 21268956 0 0 Deletion 1 INTERGENIC HET FN3263-S Chr6 21533960 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr6 4954847 4954849 0 0 Deletion 2 INTERGENIC HET FN3263-S Chr7 105686 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr7 16287285 16287289 0 0 Deletion 4 INTERGENIC HOMO FN3263-S Chr7 20866230 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr7 2269115 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr7 28263198 28263200 0 0 Deletion 2 INTERGENIC HOMO FN3263-S Chr7 4279975 4279975 0 0 Insertion 2 upstream_gene_variant HET FN3263-S Chr7 4539115 4539117 0 0 Deletion 2 INTERGENIC HET FN3263-S Chr7 7874066 C-G 0 0 Single Base Substitution 0 INTRON HET FN3263-S Chr7 9739847 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g16600 expressed protein FN3263-S Chr8 17868834 17868836 0 0 Deletion 2 INTERGENIC HET FN3263-S Chr8 22052305 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr8 24598577 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g38920 caffeoyl-CoA O-methyltransferase, putative, expressed FN3263-S Chr8 26255832 26255844 0 0 Deletion 12 CODON_DELETION HET LOC_Os08g41560 ubiquitin carboxyl-terminal hydrolase, putative, expressed FN3263-S Chr8 26421410 C-T 0 0 Single Base Substitution 0 INTRON HET FN3263-S Chr8 26737365 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr8 27181506 27181517 0 0 Deletion 11 UTR_3_PRIME HET FN3263-S Chr8 6311480 Chr7 25640371 0 Translocation 0 FN3263-S Chr8 6428781 Chr7 25640365 0 Translocation 0 FN3263-S Chr8 8611477 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr8 8625693 8625702 0 0 Deletion 9 CODON_DELETION HET LOC_Os08g14380 retrotransposon protein, putative, unclassified FN3263-S Chr8 9099344 9099345 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os08g15050 CCT/B-box zinc finger protein, putative, expressed FN3263-S Chr9 15229798 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3263-S Chr9 7765123 7944366 0 0 Inversion 179243 FN3263-S Chr9 7765133 7944366 0 0 Inversion 179233 FN3263-S Chr9 8306272 C-A 0 0 Single Base Substitution 0 INTERGENIC HET