FN3271-S Chr1 11498828 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3271-S Chr1 1259504 1259923 0 0 Deletion 419 upstream_gene_variant HET FN3271-S Chr1 15944334 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3271-S Chr1 16763248 16763248 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os01g29900 retrotransposon protein, putative, unclassified FN3271-S Chr1 19990924 19990938 0 0 Deletion 14 upstream_gene_variant HET FN3271-S Chr1 23425282 23425283 0 0 Deletion 1 downstream_gene_variant HET FN3271-S Chr1 25663789 25663790 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr1 36978345 36978346 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr1 41048067 41048068 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr1 5996883 5996884 0 0 Deletion 1 downstream_gene_variant HET FN3271-S Chr1 9514665 9514667 0 0 Deletion 2 upstream_gene_variant HET FN3271-S Chr10 10458355 10458356 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr10 1109761 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g02780 expressed protein FN3271-S Chr10 13316650 13316650 0 0 Insertion 1 upstream_gene_variant HET FN3271-S Chr10 17790740 17790740 0 0 Insertion 24 upstream_gene_variant HET FN3271-S Chr10 18653337 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3271-S Chr10 22719432 22719438 0 0 Deletion 6 upstream_gene_variant HET FN3271-S Chr10 4013843 4013843 0 0 Insertion 1 frameshift_variant HET LOC_Os10g07530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3271-S Chr10 450366 450366 0 0 Insertion 53 upstream_gene_variant HET FN3271-S Chr10 465084 Chr8 8728594 0 Translocation 0 FN3271-S Chr10 5134468 5134468 0 0 Insertion 1 3_prime_UTR_variant HET FN3271-S Chr10 6963763 6963763 0 0 Insertion 3 upstream_gene_variant HET FN3271-S Chr10 7772907 7772907 0 0 Insertion 21 upstream_gene_variant FN3271-S Chr11 16183465 16183466 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr11 16995725 16995725 0 0 Insertion 26 upstream_gene_variant HET FN3271-S Chr11 21374587 Chr1 5670917 0 Translocation 0 FN3271-S Chr11 21374600 Chr1 5670272 0 Translocation 0 FN3271-S Chr11 22777172 22777172 0 0 Insertion 2 downstream_gene_variant HET FN3271-S Chr11 26982523 26982523 0 0 Insertion 1 downstream_gene_variant HET FN3271-S Chr12 12642559 12642560 0 0 Deletion 1 frameshift_variant HET LOC_Os12g22390 retrotransposon protein, putative, Ty3-gypsy subclass FN3271-S Chr12 15787806 15787806 0 0 Insertion 1 upstream_gene_variant HET FN3271-S Chr12 16233976 16233976 0 0 Insertion 1 upstream_gene_variant HET FN3271-S Chr12 2006830 2006830 0 0 Insertion 1 downstream_gene_variant HET FN3271-S Chr12 26331683 26331688 0 0 Deletion 5 INTERGENIC HOMO FN3271-S Chr12 3299117 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3271-S Chr12 3299121 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g06800 serine esterase family protein, putative, expressed FN3271-S Chr12 4863090 Chr2 13966221 0 Translocation 0 LOC_Os02g24100 expressed protein FN3271-S Chr12 4863090 Chr2 13966221 0 Translocation 0 LOC_Os12g09280 RNA polymerase subunit, putative, expressed FN3271-S Chr12 4931075 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3271-S Chr12 5786691 5786691 0 0 Insertion 13 upstream_gene_variant HET FN3271-S Chr12 5816255 5816255 0 0 Insertion 2 upstream_gene_variant HET FN3271-S Chr2 10905623 10905714 0 0 Deletion 91 upstream_gene_variant HET FN3271-S Chr2 12577496 C-T 0 0 Single Base Substitution 0 INTRON HET FN3271-S Chr2 1361122 A-C 0 0 Single Base Substitution 0 INTRON HET FN3271-S Chr2 16307687 16307687 0 0 Insertion 19 downstream_gene_variant HET FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32710 expressed protein FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32720 hypothetical protein FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32730 neutral/alkaline invertase, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32740 SNARE domain containing protein, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32750 glycosyltransferase, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32760 60S acidic ribosomal protein, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32770 cytochrome P450, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32780 pentatricopeptide, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32790 hypothetical protein FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32814 heavy metal-associated domain containing protein, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32840 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32850 expressed protein FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32860 poly synthetase 3, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32870 retrotransposon protein, putative, unclassified, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32900 expressed protein FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32910 retrotransposon protein, putative, unclassified, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32920 expressed protein FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32930 bile acid sodium symporter, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32940 expressed protein FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32950 RCN2 Centroradialis-like1 homologous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32960 expressed protein FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g32970 hydrolase, alpha/beta fold family protein, putative, expressed FN3271-S Chr2 19423001 19597000 0 0 Deletion 173999 LOC_Os02g42980 transposon protein, putative, unclassified FN3271-S Chr2 3942985 3942986 0 0 Deletion 1 frameshift_variant HET LOC_Os02g07620 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3271-S Chr2 4195975 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN3271-S Chr3 14519829 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3271-S Chr3 16642693 16642693 0 0 Insertion 4 upstream_gene_variant HET FN3271-S Chr3 16769218 16769219 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr3 22313001 22321000 0 0 Deletion 7999 LOC_Os04g01520 expressed protein FN3271-S Chr3 2300060 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3271-S Chr3 23701880 23701880 0 0 Insertion 2 downstream_gene_variant HET FN3271-S Chr3 26086986 26087021 0 0 Deletion 35 upstream_gene_variant HET FN3271-S Chr3 34394792 Chr2 31696390 0 Translocation 0 LOC_Os03g60509 expressed protein FN3271-S Chr3 4013335 4013336 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr3 7521223 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3271-S Chr3 9193929 9193929 0 0 Insertion 1 upstream_gene_variant HET FN3271-S Chr3 9211045 9211045 0 0 Insertion 42 intergenic_region HET FN3271-S Chr4 10014698 10014724 0 0 Deletion 26 downstream_gene_variant HET FN3271-S Chr4 12265757 12265757 0 0 Insertion 1 downstream_gene_variant HET FN3271-S Chr4 14959691 14959691 0 0 Insertion 2 upstream_gene_variant HET FN3271-S Chr4 18726926 18726938 0 0 Deletion 12 upstream_gene_variant HET FN3271-S Chr4 19747660 19747660 0 0 Insertion 1 frameshift_variant HET LOC_Os04g32750 retrotransposon protein, putative, unclassified, expressed FN3271-S Chr5 18877115 Chr1 5669581 0 Translocation 0 LOC_Os01g10610 BES1/BZR1 homolog protein, putative, expressed FN3271-S Chr5 20855596 20855598 0 0 Deletion 2 downstream_gene_variant HET FN3271-S Chr5 22455245 Chr1 5672312 0 Translocation 0 FN3271-S Chr5 22455246 Chr1 5670923 0 Translocation 0 FN3271-S Chr5 2379974 C-T 0 0 Single Base Substitution 0 INTRON HET FN3271-S Chr5 25137321 25137336 0 0 Deletion 15 disruptive_inframe_deletion HET LOC_Os05g43220 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3271-S Chr5 25873715 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3271-S Chr5 27011247 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3271-S Chr5 28602376 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN3271-S Chr5 3018536 3018536 0 0 Insertion 1 downstream_gene_variant HET FN3271-S Chr6 12151612 12151613 0 0 Deletion 1 frameshift_variant HET LOC_Os06g21030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3271-S Chr6 14026793 14026978 0 0 Deletion 185 downstream_gene_variant HET FN3271-S Chr6 17372718 17372718 0 0 Insertion 1 intergenic_region HET FN3271-S Chr6 633974 Chr5 25587829 0 Translocation 0 FN3271-S Chr6 8678877 8679329 0 0 Deletion 452 downstream_gene_variant HET FN3271-S Chr6 9003101 9003101 0 0 Insertion 2 downstream_gene_variant HET FN3271-S Chr7 10070514 10070514 0 0 Insertion 19 splice_region_variant&intron_variant HET FN3271-S Chr7 12201025 12201026 0 0 Deletion 1 intergenic_region HET FN3271-S Chr7 16277274 16277274 0 0 Insertion 8 upstream_gene_variant HET FN3271-S Chr7 16402940 16402940 0 0 Insertion 2 upstream_gene_variant HET FN3271-S Chr7 18166056 Chr2 24389192 0 Translocation 0 FN3271-S Chr7 19560698 19560698 0 0 Insertion 4 upstream_gene_variant HET FN3271-S Chr7 19803400 19803400 0 0 Insertion 1 upstream_gene_variant HET FN3271-S Chr7 22010739 Chr3 8427516 0 Translocation 0 FN3271-S Chr7 2633359 Chr1 5670264 0 Translocation 0 FN3271-S Chr7 2633359 Chr5 18877114 0 Translocation 0 FN3271-S Chr7 2686190 Chr1 5672315 0 Translocation 0 FN3271-S Chr7 28762089 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3271-S Chr7 3105012 Chr1 10688312 0 Translocation 0 FN3271-S Chr7 6460545 6460545 0 0 Insertion 1 frameshift_variant HET LOC_Os07g11680 retrotransposon protein, putative, unclassified, expressed FN3271-S Chr7 8578125 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3271-S Chr7 9454061 9454062 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr7 9915970 T-A 0 0 Single Base Substitution 0 INTRON HET FN3271-S Chr8 1298824 1298824 0 0 Insertion 1 downstream_gene_variant HET FN3271-S Chr8 13660910 13660910 0 0 Insertion 5 upstream_gene_variant HET FN3271-S Chr8 15226188 Chr1 2638269 0 Translocation 0 FN3271-S Chr8 15375408 15375408 0 0 Insertion 1 intergenic_region HET FN3271-S Chr8 1547800 1547800 0 0 Insertion 1 upstream_gene_variant HET FN3271-S Chr8 15533155 15533155 0 0 Insertion 2 upstream_gene_variant HET FN3271-S Chr8 17515866 17515866 0 0 Insertion 4 upstream_gene_variant HET FN3271-S Chr8 2324939 2324945 0 0 Deletion 6 upstream_gene_variant HET FN3271-S Chr8 25491659 25491660 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr8 6369051 6369052 0 0 Deletion 1 upstream_gene_variant HET FN3271-S Chr8 6539077 Chr4 3093641 0 Translocation 0 FN3271-S Chr8 7040165 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3271-S Chr9 14444452 Chr8 28418942 0 Translocation 0 FN3271-S Chr9 1449740 1449740 0 0 Insertion 4 upstream_gene_variant HET FN3271-S Chr9 4237917 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3271-S Chr9 5022763 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g09370 BTBN18 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed FN3271-S Chr9 5042896 Chr7 14449105 0 Translocation 0 LOC_Os09g09390 transposon protein, putative, CACTA, En/Spm sub-class