FN3272-S Chr1 10175274 10175275 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os01g18180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3272-S Chr1 17306031 17306031 0 0 Insertion 1 INTERGENIC HET FN3272-S Chr1 17404485 17404513 0 0 Deletion 28 UTR_3_PRIME HET FN3272-S Chr10 20197552 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN3272-S Chr10 21995924 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g40960 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN3272-S Chr11 17833607 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3272-S Chr11 18790904 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3272-S Chr11 24445386 Chr4 29686988 0 Translocation 0 LOC_Os04g49790 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3272-S Chr11 24445386 Chr4 29686988 0 Translocation 0 LOC_Os11g40860 retrotransposon protein, putative, unclassified, expressed FN3272-S Chr11 6083901 6083901 0 0 Insertion 8 downstream_gene_variant HET FN3272-S Chr12 12558453 12558472 0 0 Deletion 19 INTERGENIC HOMO FN3272-S Chr12 17268224 17268228 0 0 Deletion 4 INTERGENIC HOMO FN3272-S Chr12 18828448 18828449 0 0 Deletion 1 INTERGENIC HOMO FN3272-S Chr12 23651748 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr12 2549894 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3272-S Chr12 27236984 27236985 0 0 Deletion 1 upstream_gene_variant HET FN3272-S Chr2 24563371 24563381 0 0 Deletion 10 INTERGENIC HET FN3272-S Chr2 26959123 T-A 0 0 Single Base Substitution 0 INTRON HET FN3272-S Chr2 35502036 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39680 retrotransposon protein, putative, LINE subclass FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39690 cytochrome P450, putative, expressed FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39700 expressed protein FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39710 transporter family protein, putative, expressed FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39720 expressed protein FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39740 expressed protein FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39760 cytochrome P450, putative, expressed FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39780 retrotransposon protein, putative, unclassified, expressed FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39790 retrotransposon protein, putative, unclassified, expressed FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39820 expressed protein FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g39830 expressed protein FN3272-S Chr3 22060001 22151000 0 0 Deletion 90999 LOC_Os03g40160 transposon protein, putative, unclassified, expressed FN3272-S Chr3 22063188 22189689 0 0 Inversion 126501 LOC_Os03g39920 retrotransposon protein, putative, unclassified, expressed FN3272-S Chr3 6214359 G-C 0 0 Single Base Substitution 0 INTRON HET FN3272-S Chr3 8032870 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr3 8032871 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr4 13170888 Chr3 22942531 0 Translocation 0 FN3272-S Chr4 21270945 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr4 4719037 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr4 6613149 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr4 7125682 7125695 0 0 Deletion 13 INTERGENIC HOMO FN3272-S Chr5 15870085 15870085 0 0 Insertion 8 downstream_gene_variant HET FN3272-S Chr5 1626526 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr5 20118886 20118890 0 0 Deletion 4 INTERGENIC HOMO FN3272-S Chr6 11215349 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr6 14304923 14304928 0 0 Deletion 5 INTRON HET FN3272-S Chr6 15600066 15600068 0 0 Deletion 2 INTERGENIC HET FN3272-S Chr6 18790226 18790227 0 0 Deletion 1 frameshift_variant HET LOC_Os06g32270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3272-S Chr6 2092292 G-A 0 0 Single Base Substitution 0 INTRON HET FN3272-S Chr6 21042864 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr6 21044331 21044334 0 0 Deletion 3 INTERGENIC HET FN3272-S Chr6 26432022 26432023 0 0 Deletion 1 upstream_gene_variant HET FN3272-S Chr6 28027017 28027027 0 0 Deletion 10 INTERGENIC HET FN3272-S Chr6 31226760 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr6 6023219 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr6 8233723 8233724 0 0 Deletion 1 INTERGENIC HET FN3272-S Chr7 14928189 15055068 0 0 Inversion 126879 FN3272-S Chr7 14928199 15055072 0 0 Inversion 126873 FN3272-S Chr7 28225689 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3272-S Chr7 29402186 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3272-S Chr8 12612774 12612775 0 0 Deletion 1 FRAME_SHIFT HOMO LOC_Os08g21110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3272-S Chr8 13184889 13184903 0 0 Deletion 14 INTERGENIC HET FN3272-S Chr8 1370229 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3272-S Chr8 13996713 13996713 0 0 Insertion 6 downstream_gene_variant HET FN3272-S Chr8 15871951 C-T 0 0 Single Base Substitution 0 INTRON HET FN3272-S Chr8 2626546 2626546 0 0 Insertion 2 INTERGENIC HET FN3272-S Chr8 7562561 7562563 0 0 Deletion 2 INTRON HET FN3272-S Chr9 11194962 C-T 0 0 Single Base Substitution 0 INTRON HET FN3272-S Chr9 5158601 5158610 0 0 Deletion 9 INTERGENIC HOMO