FN3276-S Chr1 13014312 13014314 0 0 Deletion 2 upstream_gene_variant HET FN3276-S Chr1 13045379 13045379 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr1 15873629 15873630 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr1 15873706 15873706 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr1 16333002 16333002 0 0 Insertion 2 upstream_gene_variant HET FN3276-S Chr1 17368713 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g31730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3276-S Chr1 17722031 17722031 0 0 Insertion 1 intergenic_region HET FN3276-S Chr1 1860056 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr1 2312655 2312656 0 0 Deletion 1 intergenic_region HET FN3276-S Chr1 33082583 33082643 0 0 Deletion 60 inframe_deletion HET LOC_Os01g57250 expressed protein FN3276-S Chr1 33576628 33576629 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr1 35696825 35696825 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr1 38240636 38240637 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr1 42458741 42458741 0 0 Insertion 62 upstream_gene_variant HET FN3276-S Chr1 42889149 42889163 0 0 Deletion 14 upstream_gene_variant HET FN3276-S Chr1 5463165 5463165 0 0 Insertion 70 upstream_gene_variant HET FN3276-S Chr1 6746656 6746657 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr10 21520687 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g40200 aminotransferase domain containing protein, putative, expressed FN3276-S Chr10 4567032 4567033 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr10 5127070 Chr3 13468766 0 Translocation 0 LOC_Os03g23760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3276-S Chr10 5127070 Chr3 13468766 0 Translocation 0 LOC_Os10g09500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3276-S Chr10 568560 C-T 0 0 Single Base Substitution 0 INTRON HET FN3276-S Chr10 7611102 7611113 0 0 Deletion 11 upstream_gene_variant HET FN3276-S Chr10 8111341 8111342 0 0 Deletion 1 intergenic_region HET FN3276-S Chr10 9678466 9678466 0 0 Insertion 2 upstream_gene_variant HET FN3276-S Chr11 12595172 12595173 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr11 12870951 Chr6 16413903 0 Translocation 0 FN3276-S Chr11 12871588 Chr5 23707961 0 Translocation 0 LOC_Os05g40350 expressed protein FN3276-S Chr11 12871588 Chr5 23707961 0 Translocation 0 LOC_Os11g22420 retrotransposon, putative, centromere-specific, expressed FN3276-S Chr11 19456129 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3276-S Chr11 25115619 Chr5 26317109 0 Translocation 0 FN3276-S Chr12 10628773 Chr6 17675288 0 Translocation 0 FN3276-S Chr12 11016854 11016854 0 0 Insertion 1 downstream_gene_variant HET FN3276-S Chr12 16122231 16122231 0 0 Insertion 79 intergenic_region HET FN3276-S Chr12 16650801 Chr5 9483386 0 Translocation 0 LOC_Os05g16680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3276-S Chr12 16650801 Chr5 9483386 0 Translocation 0 LOC_Os12g28200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3276-S Chr2 11928133 11928157 0 0 Deletion 24 disruptive_inframe_deletion HET LOC_Os02g20260 retrotransposon protein, putative, unclassified, expressed FN3276-S Chr2 14298883 14298884 0 0 Deletion 1 intergenic_region HET FN3276-S Chr2 15624834 T-C 0 0 Single Base Substitution 0 INTRON HET FN3276-S Chr2 20084342 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr2 22521100 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr2 22703043 22703046 0 0 Deletion 3 inframe_deletion HET LOC_Os02g37620 transposon protein, putative, CACTA, En/Spm sub-class FN3276-S Chr2 31384295 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3276-S Chr2 31644143 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr2 3301418 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3276-S Chr2 3788613 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g07340 HEAT repeat family protein, putative, expressed FN3276-S Chr2 4468463 4468464 0 0 Deletion 1 downstream_gene_variant HET FN3276-S Chr2 5158497 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3276-S Chr2 9175078 9175078 0 0 Insertion 22 upstream_gene_variant HET FN3276-S Chr3 17916083 17916083 0 0 Insertion 30 stop_gained&inframe_insertion HET LOC_Os03g31440 expressed protein FN3276-S Chr3 18125984 18125988 0 0 Deletion 4 intron_variant HET FN3276-S Chr3 19648163 19648164 0 0 Deletion 1 frameshift_variant HET LOC_Os03g35440 retrotransposon protein, putative, Ty3-gypsy subclass FN3276-S Chr3 21387216 21387216 0 0 Insertion 1 frameshift_variant HET LOC_Os03g38530 transposon protein, putative, unclassified, expressed FN3276-S Chr3 23758350 23758351 0 0 Deletion 1 downstream_gene_variant HET FN3276-S Chr3 24286855 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr3 24678256 Chr2 9611225 0 Translocation 0 FN3276-S Chr3 27218886 27218887 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr3 29762039 29762039 0 0 Insertion 2 upstream_gene_variant HET FN3276-S Chr3 6188480 6188481 0 0 Deletion 1 downstream_gene_variant HET FN3276-S Chr3 8317499 8317499 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr4 11986050 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr4 1213350 1213358 0 0 Deletion 8 INTRON HOMO FN3276-S Chr4 13826341 13826400 0 0 Deletion 59 intron_variant HET FN3276-S Chr4 15028789 15028789 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr4 17209076 17209076 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr4 18345001 18361000 0 0 Deletion 15999 LOC_Os04g30710 expressed protein FN3276-S Chr4 18345001 18361000 0 0 Deletion 15999 LOC_Os04g30860 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN3276-S Chr4 19167980 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3276-S Chr4 19228575 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN3276-S Chr4 23938478 Chr3 5773004 0 Translocation 0 FN3276-S Chr4 2527979 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3276-S Chr4 2527980 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN3276-S Chr4 2527981 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3276-S Chr4 25623882 25623883 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr4 25689675 25689675 0 0 Insertion 1 intron_variant HET FN3276-S Chr4 29551237 29551237 0 0 Insertion 60 downstream_gene_variant HET FN3276-S Chr4 3017973 3017993 0 0 Deletion 20 INTERGENIC HET FN3276-S Chr4 3358877 3358877 0 0 Insertion 1 frameshift_variant HET LOC_Os04g06400 retrotransposon protein, putative, unclassified FN3276-S Chr4 3856352 3856352 0 0 Insertion 1 intron_variant HET FN3276-S Chr4 5173069 5173071 0 0 Deletion 2 INTERGENIC HET FN3276-S Chr4 770474 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN3276-S Chr4 9531464 9531464 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr5 11124933 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g19170 transposon protein, putative, unclassified, expressed FN3276-S Chr5 11531640 11531640 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr5 12293147 12293147 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr5 1633003 1633003 0 0 Insertion 1 downstream_gene_variant HET FN3276-S Chr5 17914027 17914027 0 0 Insertion 4 downstream_gene_variant HET FN3276-S Chr5 25368749 25368750 0 0 Deletion 1 frameshift_variant HET LOC_Os05g43630 transposon protein, putative, Pong sub-class, expressed FN3276-S Chr5 29772638 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr6 10024194 Chr1 27979509 0 Translocation 0 LOC_Os01g48780 expressed protein FN3276-S Chr6 12457721 C-T 0 0 Single Base Substitution 0 INTRON HET FN3276-S Chr6 12788383 12788401 0 0 Deletion 18 intergenic_region HET FN3276-S Chr6 16106541 16413896 0 0 Inversion 307355 FN3276-S Chr6 16106836 Chr5 23761114 0 Translocation 0 FN3276-S Chr6 17655124 17655125 0 0 Deletion 1 INTRON HOMO FN3276-S Chr6 17792625 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3276-S Chr6 21506617 Chr2 12241556 0 Translocation 0 FN3276-S Chr6 3500139 3500140 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr7 12277170 12277170 0 0 Insertion 1 downstream_gene_variant HET FN3276-S Chr7 19053565 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3276-S Chr7 19351276 19351277 0 0 Deletion 1 INTERGENIC HOMO FN3276-S Chr7 27147505 27147505 0 0 Insertion 23 upstream_gene_variant HET FN3276-S Chr7 28416912 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3276-S Chr7 5301291 5301291 0 0 Insertion 20 downstream_gene_variant HET FN3276-S Chr7 6649414 6649415 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr7 7658666 7658666 0 0 Insertion 9 downstream_gene_variant HET FN3276-S Chr7 8090811 8090811 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr7 8261480 Chr3 18185031 0 Translocation 0 FN3276-S Chr8 15841204 15841204 0 0 Insertion 25 upstream_gene_variant HET FN3276-S Chr8 22811119 C-T 0 0 Single Base Substitution 0 INTRON HET FN3276-S Chr8 24787649 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr8 26031775 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3276-S Chr8 27912843 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr8 3980916 3980916 0 0 Insertion 2 upstream_gene_variant HET FN3276-S Chr8 4836360 4836361 0 0 Deletion 1 frameshift_variant HET LOC_Os08g08390 retrotransposon protein, putative, unclassified, expressed FN3276-S Chr8 5192093 Chr7 4602054 0 Translocation 0 FN3276-S Chr8 5192175 5192175 0 0 Insertion 5 INTERGENIC HET FN3276-S Chr8 6470351 6470351 0 0 Insertion 1 downstream_gene_variant HET FN3276-S Chr8 9587203 9587204 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr8 9587328 9587328 0 0 Insertion 1 upstream_gene_variant HET FN3276-S Chr9 10412992 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g17020 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3276-S Chr9 1787124 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3276-S Chr9 20644019 20644020 0 0 Deletion 1 upstream_gene_variant HET FN3276-S Chr9 21402633 Chr6 16106831 0 Translocation 0 FN3276-S Chr9 21402638 Chr6 16106542 0 Translocation 0 FN3276-S Chr9 8808152 C-A 0 0 Single Base Substitution 0 INTERGENIC HET