FN3278-S Chr1 11489604 11489605 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr1 12082437 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr1 12082438 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr1 12116038 12116039 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr1 12844290 12844291 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr1 1313385 1313386 0 0 Deletion 1 frameshift_variant HET LOC_Os01g03240 conserved hypothetical protein FN3278-S Chr1 20181135 20181135 0 0 Insertion 3 downstream_gene_variant HET FN3278-S Chr1 22508981 22508981 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr1 28135120 28135120 0 0 Insertion 8 upstream_gene_variant HET FN3278-S Chr1 29866893 29866895 0 0 Deletion 2 upstream_gene_variant HET FN3278-S Chr1 29877930 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3278-S Chr1 31339678 31339679 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr1 34069850 34069853 0 0 Deletion 3 upstream_gene_variant HET FN3278-S Chr1 42526281 42526282 0 0 Deletion 1 downstream_gene_variant HET FN3278-S Chr1 4555888 4555888 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr10 10067093 10067093 0 0 Insertion 1 downstream_gene_variant HET FN3278-S Chr10 10455541 10455541 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr10 13764672 Chr2 29617583 0 Translocation 0 FN3278-S Chr10 14078514 14078515 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr10 14212029 14212030 0 0 Deletion 1 intergenic_region HET FN3278-S Chr10 1478545 1478547 0 0 Deletion 2 downstream_gene_variant HET FN3278-S Chr10 164450 164450 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr10 3390729 3390751 0 0 Deletion 22 downstream_gene_variant HET FN3278-S Chr10 3923863 3923863 0 0 Insertion 1 downstream_gene_variant HET FN3278-S Chr10 5665704 5665704 0 0 Insertion 3 upstream_gene_variant HET FN3278-S Chr10 6326382 6326383 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr10 8750831 8750831 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr10 8854365 8854365 0 0 Insertion 1 downstream_gene_variant HET FN3278-S Chr11 11501358 11501359 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr11 12649782 12649782 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr11 12788717 G-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os11g22310 retrotransposon protein, putative, unclassified, expressed FN3278-S Chr11 14358048 14358049 0 0 Deletion 1 frameshift_variant HET LOC_Os11g25200 transposon protein, putative, CACTA, En/Spm sub-class FN3278-S Chr11 14358365 14358366 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr11 16809509 16809572 0 0 Deletion 63 downstream_gene_variant HET FN3278-S Chr11 18074281 18074281 0 0 Insertion 2 upstream_gene_variant HET FN3278-S Chr11 18759708 18759708 0 0 Insertion 4 frameshift_variant&splice_region_variant HET LOC_Os11g31920 retrotransposon protein, putative, unclassified, expressed FN3278-S Chr11 21226713 21226713 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr11 23031529 23031529 0 0 Insertion 22 downstream_gene_variant HET FN3278-S Chr11 23663020 Chr6 11605812 0 Translocation 0 FN3278-S Chr11 24645115 24645116 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr11 28628162 28628163 0 0 Deletion 1 downstream_gene_variant HET FN3278-S Chr11 5831539 5831540 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr11 5982724 5982727 0 0 Deletion 3 inframe_deletion HET LOC_Os11g10860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3278-S Chr11 7021038 7021038 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr11 728595 728604 0 0 Deletion 9 downstream_gene_variant HET FN3278-S Chr11 8180714 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN3278-S Chr11 9981924 9981925 0 0 Deletion 1 intron_variant HET FN3278-S Chr12 10176800 G-A 0 0 Single Base Substitution 0 INTRON HET FN3278-S Chr12 11911824 11911825 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr12 1211586 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr12 14610999 14610999 0 0 Insertion 2 upstream_gene_variant HET FN3278-S Chr12 17479698 17479748 0 0 Deletion 50 exon_loss_variant&splice_region_variant HET LOC_Os12g29430 OsWAK125 - OsWAK receptor-like protein OsWAK-RLP, expressed FN3278-S Chr12 20230686 Chr2 24154265 0 Translocation 0 FN3278-S Chr12 22568465 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr12 2341745 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr12 3253647 Chr8 17492515 0 Translocation 0 LOC_Os08g28630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3278-S Chr12 3253647 Chr8 17492515 0 Translocation 0 LOC_Os12g06680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3278-S Chr12 5370558 5370559 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr12 8522689 8522692 0 0 Deletion 3 upstream_gene_variant HET FN3278-S Chr12 9705869 9705870 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr2 11030182 11030182 0 0 Insertion 11 upstream_gene_variant HET FN3278-S Chr2 13615633 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr2 16564181 16564278 0 0 Deletion 97 upstream_gene_variant HET FN3278-S Chr2 21073669 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3278-S Chr2 24766580 24766580 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr2 30793140 30793141 0 0 Deletion 1 downstream_gene_variant HET FN3278-S Chr2 33687580 33687580 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr2 5096851 5096852 0 0 Deletion 1 frameshift_variant HET LOC_Os02g09870 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3278-S Chr3 11194435 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3278-S Chr3 13514048 13514048 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr3 20810052 20810053 0 0 Deletion 1 frameshift_variant HET LOC_Os03g37500 retrotransposon protein, putative, unclassified, expressed FN3278-S Chr3 23143532 23143532 0 0 Insertion 1 frameshift_variant HET LOC_Os03g41624 retrotransposon, putative, centromere-specific, expressed FN3278-S Chr3 25259054 25259054 0 0 Insertion 4 downstream_gene_variant HET FN3278-S Chr3 29311751 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr3 31280028 31280028 0 0 Insertion 10 upstream_gene_variant HET FN3278-S Chr3 35686126 35686127 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr3 4295001 4310000 0 0 Deletion 14999 LOC_Os03g32720 retrotransposon protein, putative, unclassified FN3278-S Chr3 8245080 8245080 0 0 Insertion 55 upstream_gene_variant HET FN3278-S Chr4 14263621 14263622 0 0 Deletion 1 downstream_gene_variant HET FN3278-S Chr4 22002195 22002196 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr4 22148736 Chr3 15326889 0 Translocation 0 FN3278-S Chr4 22528362 22528362 0 0 Insertion 45 upstream_gene_variant HET FN3278-S Chr4 24733286 24733293 0 0 Deletion 7 INTERGENIC HET FN3278-S Chr4 2580464 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr4 29713232 29713236 0 0 Deletion 4 INTERGENIC HOMO FN3278-S Chr4 32269364 32269364 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr4 33293328 33293370 0 0 Deletion 42 upstream_gene_variant HET FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g01530 adenylate kinase, putative, expressed FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g01540 expressed protein FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g01550 peroxidase precursor, putative, expressed FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g01560 expressed protein FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g01570 invertase/pectin methylesterase inhibitor family protein, putative, expressed FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g01580 expressed protein FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g01590 arginase, putative, expressed FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g01600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g01610 expressed protein FN3278-S Chr4 360001 414000 0 0 Deletion 53999 LOC_Os04g21450 retrotransposon, putative, centromere-specific FN3278-S Chr4 4268572 4268572 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr4 6726292 6726293 0 0 Deletion 1 intergenic_region HET FN3278-S Chr4 724907 Chr3 31273242 0 Translocation 0 FN3278-S Chr4 7871912 7871912 0 0 Insertion 23 downstream_gene_variant HET FN3278-S Chr5 10211480 10211480 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr5 12019469 12019470 0 0 Deletion 1 downstream_gene_variant HET FN3278-S Chr5 12398655 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g21090 retrotransposon protein, putative, unclassified FN3278-S Chr5 12954557 12954558 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr5 15019882 Chr2 17615209 0 Translocation 0 LOC_Os02g29610 hypothetical protein FN3278-S Chr5 1722423 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr5 23052307 23052308 0 0 Deletion 1 intergenic_region HET FN3278-S Chr5 5540550 5540568 0 0 Deletion 18 upstream_gene_variant HET FN3278-S Chr5 5661449 5661449 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr5 600434 Chr4 4408500 0 Translocation 0 LOC_Os05g02060 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed FN3278-S Chr5 600466 696973 0 0 Inversion 96507 LOC_Os05g02060 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed FN3278-S Chr5 6310337 6310387 0 0 Deletion 50 upstream_gene_variant HET FN3278-S Chr5 6411381 6411382 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr5 696967 Chr4 4408498 0 Translocation 0 FN3278-S Chr5 789896 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3278-S Chr5 8562078 Chr1 40306295 0 Translocation 0 FN3278-S Chr6 11372200 11372200 0 0 Insertion 2 upstream_gene_variant HET FN3278-S Chr6 13338408 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3278-S Chr6 13897631 Chr1 8742073 0 Translocation 0 LOC_Os06g23780 glutaryl-CoA dehydrogenase, mitochondrial precursor, putative, expressed FN3278-S Chr6 13898931 Chr1 8742070 0 Translocation 0 FN3278-S Chr6 15873932 Chr1 8112024 0 Translocation 0 FN3278-S Chr6 16436960 16436960 0 0 Insertion 39 upstream_gene_variant HET FN3278-S Chr6 16448627 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN3278-S Chr6 21771389 21771452 0 0 Deletion 63 upstream_gene_variant HET FN3278-S Chr6 22384700 22384764 0 0 Deletion 64 upstream_gene_variant HET FN3278-S Chr6 25371892 25371893 0 0 Deletion 1 frameshift_variant HET LOC_Os06g42250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3278-S Chr6 26132496 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr6 29316479 29316479 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr6 4204105 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr6 4514099 4514099 0 0 Insertion 1 frameshift_variant HET LOC_Os06g08950 retrotransposon protein, putative, unclassified, expressed FN3278-S Chr6 6572762 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr6 7028658 7028658 0 0 Insertion 72 upstream_gene_variant HET FN3278-S Chr6 7979725 7979736 0 0 Deletion 11 splice_region_variant&intron_variant HET FN3278-S Chr6 8460545 8460546 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr7 12164891 12164893 0 0 Deletion 2 intergenic_region HET FN3278-S Chr7 12240311 12240312 0 0 Deletion 1 intergenic_region HET FN3278-S Chr7 13114638 13114638 0 0 Insertion 1 downstream_gene_variant HET FN3278-S Chr7 14391753 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN3278-S Chr7 15761476 15761476 0 0 Insertion 2 intron_variant HET FN3278-S Chr7 15827465 15827510 0 0 Deletion 45 upstream_gene_variant HET FN3278-S Chr7 15967538 15967538 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr7 17430499 17430499 0 0 Insertion 3 upstream_gene_variant HET FN3278-S Chr7 17968057 17968057 0 0 Insertion 1 frameshift_variant HET LOC_Os07g30360 retrotransposon protein, putative, unclassified, expressed FN3278-S Chr7 19684105 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g32920 expressed protein FN3278-S Chr7 20498435 20498436 0 0 Deletion 1 downstream_gene_variant HET FN3278-S Chr7 21916099 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr7 29283370 29283370 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr7 9236040 9236041 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr8 11825151 11825218 0 0 Deletion 67 upstream_gene_variant HET FN3278-S Chr8 12369352 12369352 0 0 Insertion 1 downstream_gene_variant HET FN3278-S Chr8 13015583 13015584 0 0 Deletion 1 downstream_gene_variant HET FN3278-S Chr8 14905489 14905490 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr8 15027895 Chr7 11295924 0 Translocation 0 FN3278-S Chr8 16959349 G-T 0 0 Single Base Substitution 0 INTRON HET FN3278-S Chr8 21275090 21275090 0 0 Insertion 71 downstream_gene_variant HET FN3278-S Chr8 22240896 22240896 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr8 8711799 Chr3 8414052 0 Translocation 0 LOC_Os03g15380 expressed protein FN3278-S Chr9 10396957 Chr1 42148951 0 Translocation 0 FN3278-S Chr9 11645554 11645624 0 0 Deletion 70 downstream_gene_variant HET FN3278-S Chr9 13750392 13750393 0 0 Deletion 1 intron_variant HET FN3278-S Chr9 1383418 1383419 0 0 Deletion 1 frameshift_variant HET LOC_Os09g02950 retrotransposon protein, putative, unclassified, expressed FN3278-S Chr9 157564 157564 0 0 Insertion 4 frameshift_variant&stop_gained HET LOC_Os09g01150 retrotransposon protein, putative, Ty3-gypsy subclass FN3278-S Chr9 18172735 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3278-S Chr9 4753131 4753204 0 0 Deletion 73 upstream_gene_variant HET FN3278-S Chr9 4803131 4803132 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr9 5365238 5365238 0 0 Insertion 1 upstream_gene_variant HET FN3278-S Chr9 5740439 5740439 0 0 Insertion 1 downstream_gene_variant HET FN3278-S Chr9 6127699 Chr5 754968 0 Translocation 0 LOC_Os05g02340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3278-S Chr9 6127699 Chr5 754968 0 Translocation 0 LOC_Os09g11030 retrotransposon protein, putative, unclassified, expressed FN3278-S Chr9 6385471 Chr1 10914859 0 Translocation 0 FN3278-S Chr9 639736 639737 0 0 Deletion 1 upstream_gene_variant HET FN3278-S Chr9 8227266 8227266 0 0 Insertion 3 upstream_gene_variant HET FN3278-S Chr9 9259289 9259289 0 0 Insertion 1 upstream_gene_variant HET