FN3279-S Chr1 16895894 16895894 0 0 Insertion 1 intergenic_region HET FN3279-S Chr1 26678442 26678442 0 0 Insertion 1 upstream_gene_variant HET FN3279-S Chr1 36301422 G-A 0 0 Single Base Substitution 0 INTRON HET FN3279-S Chr1 37157896 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3279-S Chr1 41766127 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr10 1026833 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr10 11271297 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr10 2044486 Chr9 9544753 0 Translocation 0 LOC_Os10g04342 stripe rust resistance protein Yr10, putative, expressed FN3279-S Chr10 21062114 21062114 0 0 Insertion 1 upstream_gene_variant HET FN3279-S Chr10 22332742 Chr1 39121651 0 Translocation 0 FN3279-S Chr10 4532432 4532454 0 0 Deletion 22 upstream_gene_variant HET FN3279-S Chr10 6046217 6046218 0 0 Deletion 1 downstream_gene_variant HET FN3279-S Chr10 6596533 6596536 0 0 Deletion 3 downstream_gene_variant HET FN3279-S Chr10 8030308 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g15250 retrotransposon protein, putative, unclassified, expressed FN3279-S Chr10 8746787 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g17360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3279-S Chr10 9920638 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr11 10483476 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr11 15270196 15270196 0 0 Insertion 2 upstream_gene_variant HET FN3279-S Chr11 17706272 17706275 0 0 Deletion 3 upstream_gene_variant HET FN3279-S Chr11 20630907 20630907 0 0 Insertion 1 upstream_gene_variant HET FN3279-S Chr11 831490 831494 0 0 Deletion 4 INTRON HOMO FN3279-S Chr12 12674041 Chr8 4812157 0 Translocation 0 FN3279-S Chr12 1286838 1286840 0 0 Deletion 2 upstream_gene_variant HET FN3279-S Chr12 13773352 Chr4 713996 0 Translocation 0 FN3279-S Chr12 17036479 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr12 17472082 17472082 0 0 Insertion 1 upstream_gene_variant HET FN3279-S Chr12 5705049 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os12g10670 AAA-type ATPase family protein, putative, expressed FN3279-S Chr12 6619796 C-T 0 0 Single Base Substitution 0 INTRON HET FN3279-S Chr12 6870748 C-G 0 0 Single Base Substitution 0 INTRON HET FN3279-S Chr2 13020747 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr2 17958449 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr2 18464863 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr2 28991310 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3279-S Chr2 31844652 31844652 0 0 Insertion 1 upstream_gene_variant HET FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52270 heat shock protein DnaJ, putative, expressed FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52280 expressed protein FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52290 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52300 CPuORF38 - conserved peptide uORF-containing transcript, expressed FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52305 expressed protein FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52314 BTB1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain, expressed FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52316 BTB/POZ domain containing protein, putative, expressed FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52330 expressed protein FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52340 OsMADS22 - MADS-box family gene with MIKCc type-box, expressed FN3279-S Chr2 31999001 32042000 0 0 Deletion 42999 LOC_Os02g52630 xyloglucan fucosyltransferase, putative, expressed FN3279-S Chr2 34268042 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g56000 26S protease regulatory subunit 6A, putative, expressed FN3279-S Chr2 34273331 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr2 3732122 3956409 0 0 Inversion 224287 FN3279-S Chr2 7521642 7521643 0 0 Deletion 1 upstream_gene_variant HET FN3279-S Chr2 8138956 A-T 0 0 Single Base Substitution 0 INTRON HET FN3279-S Chr2 8889147 8889148 0 0 Deletion 1 intergenic_region HET FN3279-S Chr3 21806007 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr3 30792560 T-A 0 0 Single Base Substitution 0 INTRON HET FN3279-S Chr4 10596774 10596775 0 0 Deletion 1 FRAME_SHIFT HET LOC_Os04g19090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3279-S Chr4 12725064 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g22470 SHR5-receptor-like kinase, putative, expressed FN3279-S Chr4 18344001 18361000 0 0 Deletion 16999 LOC_Os04g30700 expressed protein FN3279-S Chr4 18344001 18361000 0 0 Deletion 16999 LOC_Os04g30710 expressed protein FN3279-S Chr4 25473454 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr4 25967294 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN3279-S Chr4 25990439 25990439 0 0 Insertion 2 upstream_gene_variant HET FN3279-S Chr4 4990721 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr4 7257204 7257204 0 0 Insertion 2 upstream_gene_variant HET FN3279-S Chr4 8027137 8027137 0 0 Insertion 1 upstream_gene_variant HET FN3279-S Chr5 10317829 10317829 0 0 Insertion 1 upstream_gene_variant HET FN3279-S Chr5 10359133 10359138 0 0 Deletion 5 INTERGENIC HET FN3279-S Chr5 10367630 10367630 0 0 Insertion 1 downstream_gene_variant HET FN3279-S Chr5 11661483 G-A 0 0 Single Base Substitution 0 INTRON HET FN3279-S Chr5 1185214 Chr2 27516208 0 Translocation 0 FN3279-S Chr5 20171525 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3279-S Chr5 21647758 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3279-S Chr5 29491241 29491252 0 0 Deletion 11 UTR_5_PRIME HET FN3279-S Chr5 29795382 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3279-S Chr5 471486 T-C 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3279-S Chr5 471489 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN3279-S Chr5 6565841 6935841 0 0 Inversion 370000 LOC_Os05g12130 EMB2261, putative, expressed FN3279-S Chr5 6565846 6935841 0 0 Inversion 369995 LOC_Os05g12130 EMB2261, putative, expressed FN3279-S Chr5 8667222 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g15280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3279-S Chr5 9373287 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN3279-S Chr6 15006669 15006669 0 0 Insertion 1 FRAME_SHIFT HOMO LOC_Os06g25680 transposon protein, putative, CACTA, En/Spm sub-class FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01550 transposon protein, putative, unclassified FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01560 retrotransposon protein, putative, unclassified, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01570 retrotransposon protein, putative, unclassified, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01580 LTPL127 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01590 lactate/malate dehydrogenase, putative, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01600 expressed protein FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01610 vacuolar-processing enzyme precursor, putative, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01620 scarecrow, putative, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01630 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01640 arginine N-methyltransferase 7, putative, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01650 expressed protein FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01660 integral membrane protein DUF6 domain containing protein, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g01670 myb-like DNA-binding domain containing protein, expressed FN3279-S Chr6 320001 400000 0 0 Deletion 79999 LOC_Os06g02550 CPuORF21 - conserved peptide uORF-containing transcript, expressed FN3279-S Chr6 4830624 4830624 0 0 Insertion 1 upstream_gene_variant HET FN3279-S Chr6 8507675 8507675 0 0 Insertion 9 upstream_gene_variant HET FN3279-S Chr7 11142001 11163000 0 0 Deletion 20999 LOC_Os07g18820 hypothetical protein FN3279-S Chr7 11142001 11163000 0 0 Deletion 20999 LOC_Os07g18830 retrotransposon protein, putative, Ty3-gypsy subclass FN3279-S Chr7 11142001 11163000 0 0 Deletion 20999 LOC_Os07g18840 transposon protein, putative, unclassified, expressed FN3279-S Chr7 1308316 1308316 0 0 Insertion 9 upstream_gene_variant HET FN3279-S Chr7 2488436 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr7 25178330 25178330 0 0 Insertion 2 frameshift_variant HET LOC_Os07g42060 retrotransposon protein, putative, unclassified, expressed FN3279-S Chr7 28581796 28581798 0 0 Deletion 2 INTERGENIC HET FN3279-S Chr7 7079240 7079248 0 0 Deletion 8 frameshift_variant HET LOC_Os07g12410 retrotransposon protein, putative, unclassified, expressed FN3279-S Chr8 10070735 Chr5 5212194 0 Translocation 0 FN3279-S Chr8 1023330 1023341 0 0 Deletion 11 intergenic_region HET FN3279-S Chr8 17945635 17945637 0 0 Deletion 2 upstream_gene_variant HET FN3279-S Chr8 18027277 18027280 0 0 Deletion 3 INTERGENIC HET FN3279-S Chr8 19612217 19612229 0 0 Deletion 12 INTERGENIC HOMO FN3279-S Chr8 25512001 25527000 0 0 Deletion 14999 LOC_Os09g01002 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3279-S Chr8 7687850 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3279-S Chr8 7687852 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3279-S Chr8 9035436 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN3279-S Chr9 12755921 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr9 13318932 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29800 expressed protein FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29810 retrotransposon protein, putative, unclassified, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29820 bZIP transcription factor domain containing protein, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29825 pentatricopeptide, putative, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29830 helix-loop-helix DNA-binding domain containing protein, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29840 heat shock protein, putative, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29850 expressed protein FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29860 expressed protein FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29870 expressed protein FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29880 expressed protein FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29890 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29900 vegetative cell wall protein gp1 precursor, putative, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29910 expressed protein FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29920 retrotransposon protein, putative, unclassified, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29930 transcription factor BIM2, putative, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29940 auxin-independent growth promoter protein, putative, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29950 OsPOP19 - Putative Prolyl Oligopeptidase homologue, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29960 dof zinc finger domain containing protein, putative, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29970 TMV-MP30 binding protein 2C, putative, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os09g29990 skin secretory protein xP2 precursor, putative, expressed FN3279-S Chr9 18109001 18251000 0 0 Deletion 141999 LOC_Os10g28850 retrotransposon protein, putative, unclassified FN3279-S Chr9 4108906 Chr7 14108125 0 Translocation 0 FN3279-S Chr9 6521380 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr9 6526326 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN3279-S Chr9 6887853 6887855 0 0 Deletion 2 upstream_gene_variant HET FN3279-S Chr9 7137081 7137082 0 0 Deletion 1 intron_variant HET FN3279-S Chr9 94325 94325 0 0 Insertion 1 downstream_gene_variant HET