FN3280-S Chr1 11816832 11816833 0 0 Deletion 1 HET FN3280-S Chr1 15509372 A-T 0 0 Single Base Substitution 0 HET FN3280-S Chr1 31998356 32184652 0 0 Inversion 0 FN3280-S Chr1 31998399 32184650 0 0 Inversion 0 FN3280-S Chr1 35043964 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g60620 retrotransposon protein, putative, unclassified, expressed FN3280-S Chr1 36226165 36226166 0 0 Insertion 1 frameshift_variant HET LOC_Os01g62570 ATP/GTP/Ca++ binding protein, putative, expressed FN3280-S Chr1 39343403 C-A 0 0 Single Base Substitution 0 HET FN3280-S Chr1 40421947 40421951 0 0 Insertion 4 HET FN3280-S Chr1 8075256 8075258 0 0 Insertion 2 HET FN3280-S Chr10 3323083 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g06450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3280-S Chr10 5528250 5528251 0 0 Insertion 1 HET FN3280-S Chr10 603218 C-T 0 0 Single Base Substitution 0 HET FN3280-S Chr11 5127700 5149915 0 0 Inversion 0 FN3280-S Chr11 5127700 5149915 0 0 Inversion 0 LOC_Os11g09630 OsFBX407 - F-box domain containing protein, expressed FN3280-S Chr12 10317340 G-T 0 0 Single Base Substitution 0 HET FN3280-S Chr12 20240099 20240100 0 0 Deletion 1 HET FN3280-S Chr2 21396320 C-T 0 0 Single Base Substitution 0 HET FN3280-S Chr2 27358719 27358724 0 0 Deletion 5 HET FN3280-S Chr2 30234027 C-T 0 0 Single Base Substitution 0 Homo FN3280-S Chr2 33247979 33247980 0 0 Insertion 1 Homo FN3280-S Chr3 35194048 35194052 0 0 Deletion 4 Homo FN3280-S Chr4 14436160 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g25030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37430 lipoxygenase protein, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37440 expressed protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37450 expressed protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37460 glutamate decarboxylase, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37470 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37480 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37490 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37500 glutamate decarboxylase, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37510 DUF623 domain containing protein, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37520 extracellular ligand-gated ion channel, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37530 expressed protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37540 expressed protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37550 aspartic proteinase nepenthesin-2 precursor, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37560 hypothetical protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37570 aspartic proteinase nepenthesin precursor, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37580 cation transport regulator-like protein 1, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37590 F-box protein FBW2, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37600 phosphate carrier protein, mitochondrial precursor, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37619 zeaxanthin epoxidase, chloroplast precursor, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37630 mitochondrial carrier protein, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37640 xyloglucan fucosyltransferase, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37650 xyloglucan fucosyltransferase, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37660 protein phosphotase protein, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37670 steroid nuclear receptor, ligand-binding, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37680 alpha/beta hydrolase fold, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37690 RNA recognition motif containing protein, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37700 expressed protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37710 serine hydrolase domain containing protein, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37720 pentatricopeptide, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37730 RING-H2 finger protein ATL3B precursor, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37740 zinc finger, C3HC4 type domain containing protein, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37750 expressed protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37760 expressed protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37790 expressed protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37800 hypothetical protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37810 expressed protein FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37820 cytokinin-O-glucosyltransferase 2, putative, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37830 retrotransposon protein, putative, unclassified, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3280-S Chr4 22292001 22523000 0 0 Deletion 230999 LOC_Os04g37860 variant latency associated nuclear antigen, putative, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37880 expressed protein FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37890 expressed protein FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37904 protein phosphatase 2C, putative, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37920 FAD binding domain of DNA photolyase domain containing protein, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37930 expressed protein FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37940 expressed protein FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37950 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37960 synaptonemal complex protein 2, putative, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37970 transporter family protein, putative, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37980 transporter family protein, putative, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g37990 transporter family protein, putative, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38000 expressed protein FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38010 transporter family protein, putative, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38026 transporter family protein, putative, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38042 retrotransposon protein, putative, unclassified, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38060 retrotransposon protein, putative, unclassified, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38070 retrotransposon protein, putative, unclassified, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38100 retrotransposon protein, putative, unclassified FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38110 retrotransposon protein, putative, unclassified FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38129 retrotransposon protein, putative, unclassified FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38140 retrotransposon protein, putative, unclassified, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38150 retrotransposon protein, putative, Ty3-gypsy subclass FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38160 retrotransposon protein, putative, unclassified, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38170 retrotransposon protein, putative, unclassified, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38200 retrotransposon protein, putative, unclassified FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38220 transporter family protein, putative, expressed FN3280-S Chr4 22526001 22751000 0 0 Deletion 224999 LOC_Os04g38230 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38240 transposon protein, putative, unclassified, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38250 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38260 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38270 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38274 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38280 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38290 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38300 hypothetical protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38310 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38320 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38330 radical SAM enzyme, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38340 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38350 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38360 wound/stress protein, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38370 wound/stress protein, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38380 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38390 wound/stress protein, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38400 ethylene-insensitive 3, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38410 chlorophyll A-B binding protein, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38420 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38430 nodulin, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38450 gamma-glutamyltranspeptidase 1 precursor, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38460 hypothetical protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38470 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38480 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38490 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38500 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38510 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38520 CPuORF18 - conserved peptide uORF-containing transcript, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38525 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38530 aldose 1-epimerase, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38540 aldose 1-epimerase, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38550 expressed protein FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38560 pectinesterase, putative, expressed FN3280-S Chr4 22759001 22920000 0 0 Deletion 160999 LOC_Os04g38570 multidrug resistance protein, putative, expressed FN3280-S Chr4 31232324 T-A 0 0 Single Base Substitution 0 HET FN3280-S Chr4 5083404 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g09480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3280-S Chr4 5207157 C-T 0 0 Single Base Substitution 0 HET FN3280-S Chr4 5328460 Chr1 33752558 0 Translocation 0 LOC_Os04g09910 retrotransposon protein, putative, Ty3-gypsy subclass FN3280-S Chr5 10650793 G-T 0 0 Single Base Substitution 0 HET FN3280-S Chr5 24473789 C-A 0 0 Single Base Substitution 0 HET FN3280-S Chr5 26922750 A-G 0 0 Single Base Substitution 0 HET FN3280-S Chr5 6476233 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g11428 expressed protein FN3280-S Chr5 7881067 C-T 0 0 Single Base Substitution 0 HET FN3280-S Chr6 11370762 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g19890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3280-S Chr6 16138998 16139000 0 0 Insertion 2 HET FN3280-S Chr6 17684901 17685026 0 0 Deletion 125 HET FN3280-S Chr6 22363571 22363580 0 0 Deletion 9 Homo FN3280-S Chr6 2292885 2292888 0 0 Insertion 3 HET FN3280-S Chr6 2480356 2480358 0 0 Insertion 2 HET FN3280-S Chr7 13868166 Chr2 2776358 0 Translocation 0 FN3280-S Chr7 13868166 Chr2 2779043 0 Translocation 0 FN3280-S Chr7 13868166 Chr2 2779043 0 Translocation 0 LOC_Os02g05680 apoptosis-inducing factor 2, putative, expressed FN3280-S Chr7 17211857 17211858 0 0 Deletion 1 HET FN3280-S Chr7 1786001 C-G 0 0 Single Base Substitution 0 HET FN3280-S Chr7 22811745 G-A 0 0 Single Base Substitution 0 Homo FN3280-S Chr7 28769919 28769926 0 0 Deletion 7 HET FN3280-S Chr7 29040218 T-A 0 0 Single Base Substitution 0 Homo FN3280-S Chr8 12509609 C-G 0 0 Single Base Substitution 0 HET FN3280-S Chr8 16197797 G-A 0 0 Single Base Substitution 0 HET FN3280-S Chr8 16448122 A-T 0 0 Single Base Substitution 0 HET FN3280-S Chr8 18774376 18774380 0 0 Insertion 4 HET FN3280-S Chr8 21010372 G-T 0 0 Single Base Substitution 0 HET FN3280-S Chr8 21890634 21890635 0 0 Insertion 1 HET FN3280-S Chr8 26895109 26895110 0 0 Deletion 1 frameshift_variant Homo LOC_Os08g42550 AP2 domain containing protein, expressed FN3280-S Chr8 5201263 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g08950 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3280-S Chr9 10201850 C-A 0 0 Single Base Substitution 0 HET FN3280-S Chr9 11727803 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g19620 retrotransposon protein, putative, unclassified FN3280-S Chr9 16820805 16820816 0 0 Deletion 11 HET FN3280-S Chr9 16847344 C-A 0 0 Single Base Substitution 0 HET FN3280-S Chr9 16847345 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g27670 expressed protein FN3280-S Chr9 1979448 G-A 0 0 Single Base Substitution 0 Homo