FN3294-S Chr1 10098199 10098202 0 0 Deletion 3 HET FN3294-S Chr1 10728133 G-A 0 0 Single Base Substitution 0 HET FN3294-S Chr1 14448485 A-G 0 0 Single Base Substitution 0 HET FN3294-S Chr1 21098657 21129593 0 0 Inversion 0 FN3294-S Chr1 23702221 G-C 0 0 Single Base Substitution 0 HET FN3294-S Chr1 24422753 G-T 0 0 Single Base Substitution 0 HET FN3294-S Chr1 30721042 30721065 0 0 Deletion 23 frameshift_variant Homo LOC_Os01g53480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3294-S Chr1 7819042 7819045 0 0 Deletion 3 HET FN3294-S Chr10 1137859 A-T 0 0 Single Base Substitution 0 Homo FN3294-S Chr10 2038263 2038264 0 0 Deletion 1 HET FN3294-S Chr10 20779269 C-T 0 0 Single Base Substitution 0 HET FN3294-S Chr10 21822029 T-G 0 0 Single Base Substitution 0 HET FN3294-S Chr10 2555108 C-T 0 0 Single Base Substitution 0 HET FN3294-S Chr10 7020023 7020026 0 0 Insertion 3 HET FN3294-S Chr10 7091345 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g12710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3294-S Chr11 12009850 C-T 0 0 Single Base Substitution 0 HET FN3294-S Chr11 15287145 C-T 0 0 Single Base Substitution 0 HET FN3294-S Chr11 15287148 C-G 0 0 Single Base Substitution 0 HET FN3294-S Chr11 20987460 20987461 0 0 Deletion 1 HET FN3294-S Chr11 21306932 Chr10 6721200 0 Translocation 0 FN3294-S Chr11 21306932 Chr10 6721200 0 Translocation 0 LOC_Os10g12090 expressed protein FN3294-S Chr12 1429708 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os12g03570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3294-S Chr12 19825173 G-A 0 0 Single Base Substitution 0 Homo FN3294-S Chr12 24958746 24958751 0 0 Deletion 5 HET FN3294-S Chr12 26070903 26070927 0 0 Deletion 24 HET FN3294-S Chr12 27440373 27440375 0 0 Insertion 2 HET FN3294-S Chr2 10879791 G-A 0 0 Single Base Substitution 0 Homo FN3294-S Chr2 14085567 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g24280 transposon protein, putative, unclassified, expressed FN3294-S Chr2 15450591 G-A 0 0 Single Base Substitution 0 HET FN3294-S Chr2 15983276 A-G 0 0 Single Base Substitution 0 HET FN3294-S Chr2 19375172 C-T 0 0 Single Base Substitution 0 HET FN3294-S Chr2 19375173 C-T 0 0 Single Base Substitution 0 HET FN3294-S Chr2 19375174 A-T 0 0 Single Base Substitution 0 HET FN3294-S Chr2 20329120 T-C 0 0 Single Base Substitution 0 HET FN3294-S Chr2 2107696 C-T 0 0 Single Base Substitution 0 HET FN3294-S Chr2 2309522 2309528 0 0 Deletion 6 HET FN3294-S Chr2 5857031 5857037 0 0 Deletion 6 HET FN3294-S Chr2 7936310 7936312 0 0 Insertion 2 HET FN3294-S Chr3 10719457 G-A 0 0 Single Base Substitution 0 HET FN3294-S Chr3 15668284 C-T 0 0 Single Base Substitution 0 Homo FN3294-S Chr3 24587646 G-A 0 0 Single Base Substitution 0 HET FN3294-S Chr3 25156189 T-C 0 0 Single Base Substitution 0 Homo FN3294-S Chr3 30840422 T-A 0 0 Single Base Substitution 0 HET FN3294-S Chr3 5766331 5766332 0 0 Deletion 1 HET FN3294-S Chr4 19019661 C-T 0 0 Single Base Substitution 0 Homo FN3294-S Chr4 28001378 T-C 0 0 Single Base Substitution 0 HET FN3294-S Chr4 7600097 G-A 0 0 Single Base Substitution 0 HET FN3294-S Chr5 16749529 A-T 0 0 Single Base Substitution 0 Homo FN3294-S Chr5 25409108 C-A 0 0 Single Base Substitution 0 HET FN3294-S Chr5 25940094 T-C 0 0 Single Base Substitution 0 HET FN3294-S Chr5 26745802 26745810 0 0 Deletion 8 HET FN3294-S Chr5 29432416 29432417 0 0 Insertion 1 HET FN3294-S Chr5 29437539 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g51320 retrotransposon protein, putative, unclassified, expressed FN3294-S Chr5 3850305 3850319 0 0 Deletion 14 Homo FN3294-S Chr5 9678586 G-T 0 0 Single Base Substitution 0 Homo FN3294-S Chr6 1757430 1757437 0 0 Deletion 7 HET FN3294-S Chr6 19781793 G-C 0 0 Single Base Substitution 0 Homo FN3294-S Chr6 26029429 C-T 0 0 Single Base Substitution 0 Homo FN3294-S Chr6 30381556 30381571 0 0 Deletion 15 Homo FN3294-S Chr6 7523370 T-A 0 0 Single Base Substitution 0 HET FN3294-S Chr7 15413976 15413984 0 0 Deletion 8 HET FN3294-S Chr7 17022881 T-A 0 0 Single Base Substitution 0 HET FN3294-S Chr7 17058267 A-G 0 0 Single Base Substitution 0 HET FN3294-S Chr7 17326597 T-A 0 0 Single Base Substitution 0 HET FN3294-S Chr7 21735227 T-A 0 0 Single Base Substitution 0 HET FN3294-S Chr7 22182188 G-A 0 0 Single Base Substitution 0 HET FN3294-S Chr7 23386323 G-A 0 0 Single Base Substitution 0 HET FN3294-S Chr7 5637561 T-C 0 0 Single Base Substitution 0 HET FN3294-S Chr7 646099 A-G 0 0 Single Base Substitution 0 HET FN3294-S Chr8 13702902 13702905 0 0 Deletion 3 HET FN3294-S Chr8 13746290 A-G 0 0 Single Base Substitution 0 Homo FN3294-S Chr8 23922338 T-A 0 0 Single Base Substitution 0 HET FN3294-S Chr8 24936823 G-T 0 0 Single Base Substitution 0 HET FN3294-S Chr8 2609267 2609271 0 0 Deletion 4 frameshift_variant HET LOC_Os08g05070 translation initiation factor IF-2, putative, expressed FN3294-S Chr8 6533239 A-G 0 0 Single Base Substitution 0 Homo FN3294-S Chr8 6932696 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g11820 transposon protein, putative, unclassified, expressed FN3294-S Chr9 13031352 Chr1 3901421 0 Translocation 0 FN3294-S Chr9 13031352 Chr1 3901421 0 Translocation 0 LOC_Os01g08050 hypothetical protein FN3294-S Chr9 13035694 Chr1 3901409 0 Translocation 0 LOC_Os01g08050 hypothetical protein FN3294-S Chr9 13035694 Chr1 3901409 0 Translocation 0 LOC_Os09g21540 expressed protein FN3294-S Chr9 14631906 Chr2 13506474 0 Translocation 0 LOC_Os02g22680 integral membrane protein DUF6 containing protein, expressed FN3294-S Chr9 14631906 Chr2 13506474 0 Translocation 0 LOC_Os09g24570 growth regulator related protein, putative, expressed FN3294-S Chr9 14632351 Chr2 13506462 0 Translocation 0 LOC_Os02g22680 integral membrane protein DUF6 containing protein, expressed FN3294-S Chr9 14632351 Chr2 13506462 0 Translocation 0 LOC_Os09g24570 growth regulator related protein, putative, expressed FN3294-S Chr9 3880192 C-T 0 0 Single Base Substitution 0 Homo