FN3301-S Chr1 13508650 C-A 0 0 Single Base Substitution 0 HET FN3301-S Chr1 19947889 19947890 0 0 Insertion 1 HET FN3301-S Chr1 293270 293277 0 0 Deletion 7 frameshift_variant HET LOC_Os01g01580 expressed protein FN3301-S Chr1 29889976 G-A 0 0 Single Base Substitution 0 HET FN3301-S Chr10 10944339 Chr2 7858183 0 Translocation 0 LOC_Os02g14320 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr10 10944339 Chr2 7858183 0 Translocation 0 LOC_Os10g21380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr10 1765893 G-A 0 0 Single Base Substitution 0 Homo FN3301-S Chr10 5777827 5777832 0 0 Deletion 5 Homo FN3301-S Chr10 6277416 Chr8 230114 0 Translocation 0 FN3301-S Chr10 6277416 Chr8 230114 0 Translocation 0 LOC_Os08g01360 RING finger protein 13, putative, expressed FN3301-S Chr10 6277422 Chr8 228663 0 Translocation 0 FN3301-S Chr10 6277422 Chr8 228663 0 Translocation 0 LOC_Os08g01360 RING finger protein 13, putative, expressed FN3301-S Chr10 8897309 8897322 0 0 Deletion 13 HET FN3301-S Chr10 9052411 C-T 0 0 Single Base Substitution 0 Homo FN3301-S Chr10 9289823 T-A 0 0 Single Base Substitution 0 Homo FN3301-S Chr10 9289824 C-A 0 0 Single Base Substitution 0 Homo FN3301-S Chr11 13018821 C-T 0 0 Single Base Substitution 0 HET FN3301-S Chr11 16327713 G-A 0 0 Single Base Substitution 0 HET FN3301-S Chr11 2084533 A-G 0 0 Single Base Substitution 0 HET FN3301-S Chr11 21017059 A-G 0 0 Single Base Substitution 0 HET FN3301-S Chr11 22433176 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g37860 stripe rust resistance protein Yr10, putative, expressed FN3301-S Chr11 6116915 6116916 0 0 Deletion 1 HET FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02890 retrotransposon protein, putative, SINE subclass, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02900 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02910 glycosyl transferase, family 8, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02920 expressed protein FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02930 expressed protein FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02940 expressed protein FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02950 EMB2748, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02960 glutathione S-transferase, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02970 RNA binding protein, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g02980 nucleoside-triphosphatase, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03000 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03010 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03020 transposon protein, putative, CACTA, En/Spm sub-class FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03030 conserved hypothetical protein FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03040 no apical meristem protein, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03050 no apical meristem protein, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03060 expressed protein FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03070 FHA domain containing protein, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03080 rp3 protein, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03090 ribosomal protein, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03094 expressed protein FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03100 exostosin family domain containing protein, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03110 ZF-HD protein dimerisation region containing protein, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03120 expressed protein FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03130 CDC45A - Putative DNA replication initiation protein, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03140 expressed protein FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03150 myb-like DNA-binding domain containing protein, putative, expressed FN3301-S Chr12 1054001 1204000 0 0 Deletion 149999 LOC_Os12g03160 transposon protein, putative, unclassified, expressed FN3301-S Chr12 14629870 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g25350 expressed protein FN3301-S Chr12 16808030 Chr9 4916640 0 Translocation 0 FN3301-S Chr12 3920057 G-A 0 0 Single Base Substitution 0 HET FN3301-S Chr12 4541235 Chr5 29429747 0 Translocation 0 FN3301-S Chr12 4541235 Chr5 29429747 0 Translocation 0 LOC_Os05g51300 transposon protein, putative, unclassified, expressed FN3301-S Chr2 15705913 15705915 0 0 Deletion 2 frameshift_variant Homo LOC_Os02g26740 transposon protein, putative, Pong sub-class, expressed FN3301-S Chr2 27848389 C-T 0 0 Single Base Substitution 0 HET FN3301-S Chr2 3574739 3574740 0 0 Insertion 1 HET FN3301-S Chr2 7102896 A-G 0 0 Single Base Substitution 0 Homo FN3301-S Chr2 7109777 7109783 0 0 Deletion 6 Homo FN3301-S Chr3 16246890 16246895 0 0 Deletion 5 HET FN3301-S Chr3 17301263 C-T 0 0 Single Base Substitution 0 HET FN3301-S Chr3 20045813 20045820 0 0 Deletion 7 Homo FN3301-S Chr3 24372293 24372295 0 0 Insertion 2 frameshift_variant HET LOC_Os03g43610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3301-S Chr3 25165612 T-C 0 0 Single Base Substitution 0 HET FN3301-S Chr3 25341652 25341654 0 0 Deletion 2 HET FN3301-S Chr4 16304317 G-T 0 0 Single Base Substitution 0 Homo FN3301-S Chr4 16525189 G-A 0 0 Single Base Substitution 0 HET FN3301-S Chr4 2359340 2359342 0 0 Insertion 2 HET FN3301-S Chr4 24906951 24906953 0 0 Insertion 2 HET FN3301-S Chr4 5652800 G-T 0 0 Single Base Substitution 0 Homo FN3301-S Chr4 7279312 G-A 0 0 Single Base Substitution 0 HET FN3301-S Chr4 744928 745122 0 0 Inversion 0 FN3301-S Chr5 25866714 C-T 0 0 Single Base Substitution 0 HET FN3301-S Chr5 2972520 2972522 0 0 Deletion 2 HET FN3301-S Chr5 4955780 T-C 0 0 Single Base Substitution 0 HET FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24430 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24450 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24460 pleiotropic drug resistance protein 2, putative, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24470 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24480 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24490 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24500 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24510 retrotransposon protein, putative, unclassified FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24520 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24530 transposon protein, putative, unclassified, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24540 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24550 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24560 hypothetical protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24570 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24580 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24594 exonuclease, putative, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24610 hypothetical protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24620 retrotransposon protein, putative, Ty3-gypsy subclass FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24650 transposon protein, putative, unclassified FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24660 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24670 retrotransposon protein, putative, unclassified FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24680 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24690 hypothetical protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24704 acyl-coenzyme A oxidase, putative, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24711 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24720 retrotransposon protein, putative, Ty3-gypsy subclass FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24730 hydrolase, alpha/beta fold family domain containing protein, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24750 transposon protein, putative, Mariner sub-class, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24760 retrotransposon protein, putative, unclassified FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24800 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24810 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24820 retrotransposon protein, putative, Ty3-gypsy subclass FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24840 SacI homology domain containing protein, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24850 OsIAA22 - Auxin-responsive Aux/IAA gene family member, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24870 bromodomain domain containing protein, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24890 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24900 hypothetical protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24910 expressed protein FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24920 SAR DNA-binding protein-like, putative, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24930 transposon protein, putative, Ac/Ds sub-class, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24950 retrotransposon protein, putative, Ty3-gypsy subclass FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr6 14300001 14642000 0 0 Deletion 341999 LOC_Os06g24990 xylanase inhibitor protein 1 precursor, putative, expressed FN3301-S Chr6 14746660 A-C 0 0 Single Base Substitution 0 Homo FN3301-S Chr6 16910001 16945000 0 0 Deletion 34999 LOC_Os06g29490 expressed protein FN3301-S Chr6 16910001 16945000 0 0 Deletion 34999 LOC_Os06g29520 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr6 16910001 16945000 0 0 Deletion 34999 LOC_Os06g29530 retrotransposon protein, putative, unclassified FN3301-S Chr6 16910001 16945000 0 0 Deletion 34999 LOC_Os06g29540 expressed protein FN3301-S Chr6 16910001 16945000 0 0 Deletion 34999 LOC_Os06g29550 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr6 16910001 16945000 0 0 Deletion 34999 LOC_Os06g29560 expressed protein FN3301-S Chr6 16910001 16945000 0 0 Deletion 34999 LOC_Os06g29570 retrotransposon protein, putative, unclassified FN3301-S Chr6 20749227 20749230 0 0 Insertion 3 HET FN3301-S Chr6 27535646 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g45520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3301-S Chr6 28248974 G-T 0 0 Single Base Substitution 0 Homo FN3301-S Chr7 10982186 T-A 0 0 Single Base Substitution 0 HET FN3301-S Chr7 1126900 1126901 0 0 Insertion 1 Homo FN3301-S Chr7 13037753 13043431 0 0 Inversion 0 LOC_Os07g23120 expressed protein FN3301-S Chr7 13037766 13043440 0 0 Inversion 0 LOC_Os07g23120 expressed protein FN3301-S Chr7 13137631 13462194 0 0 Inversion 0 LOC_Os07g23300 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr7 22918003 Chr5 14513562 0 Translocation 0 LOC_Os05g25070 expressed protein FN3301-S Chr7 22918003 Chr5 14513562 0 Translocation 0 LOC_Os07g38210 expressed protein FN3301-S Chr7 23489980 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g39230 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr7 26647677 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR HET LOC_Os07g44670 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr7 27594562 28200712 0 0 Inversion 0 FN3301-S Chr7 27594571 28200712 0 0 Inversion 0 FN3301-S Chr7 3528809 3528811 0 0 Deletion 2 Homo FN3301-S Chr8 16576616 16576617 0 0 Deletion 1 HET FN3301-S Chr8 16928364 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g27790 retrotransposon protein, putative, unclassified, expressed FN3301-S Chr8 18666183 19596717 0 0 Inversion 0 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3301-S Chr8 18666184 19596717 0 0 Inversion 0 LOC_Os08g30330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3301-S Chr8 23606771 C-T 0 0 Single Base Substitution 0 HET FN3301-S Chr8 28429988 G-A 0 0 Single Base Substitution 0 HET FN3301-S Chr8 7953540 7953541 0 0 Deletion 1 HET FN3301-S Chr9 14311000 14311001 0 0 Insertion 1 HET FN3301-S Chr9 5559325 Chr1 5689927 0 Translocation 0 LOC_Os01g10650 hypothetical protein FN3301-S Chr9 5559325 Chr1 5689927 0 Translocation 0 LOC_Os09g10210 expressed protein