FN3306-S Chr1 16224538 C-T 0 0 Single Base Substitution 0 HET FN3306-S Chr1 17058643 C-T 0 0 Single Base Substitution 0 HET FN3306-S Chr1 25858823 C-A 0 0 Single Base Substitution 0 HET FN3306-S Chr1 31221649 31221651 0 0 Deletion 2 Homo FN3306-S Chr1 32205208 C-A 0 0 Single Base Substitution 0 Homo FN3306-S Chr10 10250121 Chr5 22169329 0 Translocation 0 LOC_Os10g20390 MATE efflux family protein, putative, expressed FN3306-S Chr10 13120554 Chr4 34950801 0 Translocation 0 FN3306-S Chr10 13120554 Chr4 34950801 0 Translocation 0 LOC_Os04g58760 membrane associated DUF588 domain containing protein, putative, expressed FN3306-S Chr10 14813865 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g28470 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr10 4607510 Chr9 7511813 0 Translocation 0 FN3306-S Chr10 4607510 Chr9 7511813 0 Translocation 0 LOC_Os09g13010 hypothetical protein FN3306-S Chr10 6020725 G-A 0 0 Single Base Substitution 0 HET FN3306-S Chr10 8077406 T-C 0 0 Single Base Substitution 0 HET FN3306-S Chr10 9640976 9640977 0 0 Deletion 1 HET FN3306-S Chr11 13529801 G-A 0 0 Single Base Substitution 0 HET FN3306-S Chr11 16402986 16402988 0 0 Deletion 2 HET FN3306-S Chr11 17738803 17738815 0 0 Insertion 12 HET FN3306-S Chr11 21321892 G-T 0 0 Single Base Substitution 0 HET FN3306-S Chr11 26257595 Chr4 6930031 0 Translocation 0 FN3306-S Chr12 10166845 10166846 0 0 Insertion 1 HET FN3306-S Chr12 12520350 G-A 0 0 Single Base Substitution 0 Homo FN3306-S Chr12 13545259 Chr4 6233521 0 Translocation 0 FN3306-S Chr12 13545259 Chr4 6233521 0 Translocation 0 LOC_Os04g11410 transposon protein, putative, CACTA, En/Spm sub-class FN3306-S Chr12 14570933 T-A 0 0 Single Base Substitution 0 Homo FN3306-S Chr12 15267360 15267361 0 0 Insertion 1 frameshift_variant HET LOC_Os12g26190 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr12 18179682 Chr1 16356796 0 Translocation 0 FN3306-S Chr12 18179682 Chr1 16356796 0 Translocation 0 LOC_Os01g29190 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr12 23058546 Chr7 23012573 0 Translocation 0 FN3306-S Chr2 10724490 A-T 0 0 Single Base Substitution 0 HET FN3306-S Chr2 13813178 T-A 0 0 Single Base Substitution 0 HET FN3306-S Chr2 18758234 18758235 0 0 Deletion 1 HET FN3306-S Chr2 31170103 C-G 0 0 Single Base Substitution 0 HET FN3306-S Chr2 8247106 8247107 0 0 Deletion 1 frameshift_variant Homo LOC_Os02g14840 potassium channel KAT1, putative, expressed FN3306-S Chr2 8352838 8352840 0 0 Insertion 2 HET FN3306-S Chr2 9869493 C-A 0 0 Single Base Substitution 0 Homo FN3306-S Chr3 10326369 A-T 0 0 Single Base Substitution 0 HET FN3306-S Chr3 23796548 T-G 0 0 Single Base Substitution 0 Homo FN3306-S Chr3 5398401 A-G 0 0 Single Base Substitution 0 HET FN3306-S Chr4 11647905 11647906 0 0 Deletion 1 Homo FN3306-S Chr4 22634069 22634075 0 0 Deletion 6 HET FN3306-S Chr4 29377951 29377953 0 0 Insertion 2 HET FN3306-S Chr4 7332769 7417125 0 0 Inversion 0 LOC_Os04g13240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3306-S Chr4 7332861 7417133 0 0 Inversion 0 LOC_Os04g13240 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3306-S Chr4 7401388 7401396 0 0 Deletion 8 frameshift_variant Homo LOC_Os04g13320 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr4 8052593 8052596 0 0 Deletion 3 HET FN3306-S Chr4 8142517 G-A 0 0 Single Base Substitution 0 Homo FN3306-S Chr5 10981887 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g18920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3306-S Chr5 10981889 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g18920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3306-S Chr5 10981891 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g18920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3306-S Chr5 11455459 11455461 0 0 Deletion 2 HET FN3306-S Chr5 17739522 T-C 0 0 Single Base Substitution 0 HET FN3306-S Chr5 23222048 G-A 0 0 Single Base Substitution 0 Homo FN3306-S Chr5 2671461 2671468 0 0 Deletion 7 HET FN3306-S Chr5 5425947 T-G 0 0 Single Base Substitution 0 HET FN3306-S Chr5 6082585 C-T 0 0 Single Base Substitution 0 HET FN3306-S Chr6 21607224 G-C 0 0 Single Base Substitution 0 HET FN3306-S Chr6 25405127 25536811 0 0 Inversion 0 LOC_Os06g42300 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3306-S Chr6 25405127 25536811 0 0 Inversion 0 LOC_Os06g42480 hypothetical protein FN3306-S Chr6 25405205 25536817 0 0 Inversion 0 LOC_Os06g42300 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3306-S Chr6 25405205 25536817 0 0 Inversion 0 LOC_Os06g42480 hypothetical protein FN3306-S Chr6 27934909 27935525 0 0 Inversion 0 LOC_Os06g46070 hypothetical protein FN3306-S Chr6 30287515 30287557 0 0 Deletion 42 HET FN3306-S Chr6 959389 976630 0 0 Inversion 0 FN3306-S Chr7 15105292 A-G 0 0 Single Base Substitution 0 HET FN3306-S Chr8 10555451 C-T 0 0 Single Base Substitution 0 HET FN3306-S Chr8 11542155 11542156 0 0 Insertion 1 HET FN3306-S Chr8 12107532 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g20180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3306-S Chr8 1365283 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g03040 expressed protein FN3306-S Chr8 15556838 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g25570 histone deacetylase, putative, expressed FN3306-S Chr8 17188529 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g28160 hypothetical protein FN3306-S Chr8 18734116 A-G 0 0 Single Base Substitution 0 HET FN3306-S Chr8 19562622 C-A 0 0 Single Base Substitution 0 HET FN3306-S Chr9 10173943 Chr4 25037326 0 Translocation 0 FN3306-S Chr9 10173944 Chr4 25037771 0 Translocation 0 FN3306-S Chr9 13003673 13003674 0 0 Deletion 1 Homo FN3306-S Chr9 18574205 A-G 0 0 Single Base Substitution 0 HET FN3306-S Chr9 22142557 22142561 0 0 Insertion 4 HET FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14510 peroxin-3 family protein, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14520 integral membrane protein, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14530 hAT dimerisation domain-containing protein, putative FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14540 protein phosphatase 2C, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14550 RNA recognition motif containing protein, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14560 expressed protein FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14570 tropinone reductase, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14580 protein kinase domain containing protein, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14590 proteasome maturation factor UMP1 family protein, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14600 peroxisomal membrane protein-related, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14610 DCL2, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14614 serine/arginine repetitive matrix protein 1, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14620 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14630 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14640 expressed protein FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14650 transposon protein, putative, Pong sub-class, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14660 legume lectins beta domain containing protein, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14670 phosphoenolpyruvate carboxylase, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14680 expressed protein FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14690 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14700 2-aminoethanethiol dioxygenase, putative, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14710 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14720 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3306-S Chr9 8578001 8766000 0 0 Deletion 187999 LOC_Os09g14740 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8773001 8797000 0 0 Deletion 23999 LOC_Os09g14760 expressed protein FN3306-S Chr9 8773001 8797000 0 0 Deletion 23999 LOC_Os09g14770 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8773001 8797000 0 0 Deletion 23999 LOC_Os09g14780 retrotransposon, putative, centromere-specific, expressed FN3306-S Chr9 8802001 8838000 0 0 Deletion 35999 LOC_Os09g14790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3306-S Chr9 8802001 8838000 0 0 Deletion 35999 LOC_Os09g14800 transposon protein, putative, unclassified, expressed FN3306-S Chr9 8802001 8838000 0 0 Deletion 35999 LOC_Os09g14810 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8802001 8838000 0 0 Deletion 35999 LOC_Os09g14820 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8849001 8866000 0 0 Deletion 16999 LOC_Os09g14850 retrotransposon protein, putative, unclassified, expressed FN3306-S Chr9 8849001 8866000 0 0 Deletion 16999 LOC_Os09g14860 retrotransposon protein, putative, unclassified, expressed