FN3312-S Chr1 11052413 C-T 0 0 Single Base Substitution 0 HET FN3312-S Chr1 18781996 A-T 0 0 Single Base Substitution 0 HET FN3312-S Chr1 20721164 A-G 0 0 Single Base Substitution 0 HET FN3312-S Chr1 21029436 G-A 0 0 Single Base Substitution 0 HET FN3312-S Chr1 22635534 T-A 0 0 Single Base Substitution 0 HET FN3312-S Chr1 29606571 29606573 0 0 Insertion 2 HET FN3312-S Chr1 859508 859511 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os01g02580 protein kinase domain containing protein, expressed FN3312-S Chr10 16410554 Chr7 25006271 0 Translocation 0 LOC_Os10g31290 expressed protein FN3312-S Chr10 16410880 Chr7 25006275 0 Translocation 0 LOC_Os10g31290 expressed protein FN3312-S Chr10 22275508 T-C 0 0 Single Base Substitution 0 HET FN3312-S Chr10 3671057 A-G 0 0 Single Base Substitution 0 HET FN3312-S Chr10 618571 618577 0 0 Deletion 6 HET FN3312-S Chr10 9802256 T-A 0 0 Single Base Substitution 0 HET FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22430 retrotransposon protein, putative, unclassified FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22440 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22460 hypothetical protein FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22480 transposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22489 expressed protein FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22500 expressed protein FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22510 retrotransposon protein, putative, Ty3-gypsy subclass FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22530 retrotransposon, putative, centromere-specific FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22540 retrotransposon protein, putative, Ty3-gypsy subclass FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22600 tRNA synthetases class II domain containing protein, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22610 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22620 endonuclease/Exonuclease/phosphatase family protein, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22630 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22640 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22650 histone H3, putative, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22660 expressed protein FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22670 retrotransposon, putative, centromere-specific, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22680 histone H3, putative, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22690 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22700 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22710 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22720 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22730 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22740 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22750 expressed protein FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22760 expressed protein FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22780 expressed protein FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22790 expressed protein FN3312-S Chr12 12664001 12872000 0 0 Deletion 207999 LOC_Os12g22800 expressed protein FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22820 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22830 retrotransposon protein, putative, Ty1-copia subclass FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22839 expressed protein FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22850 expressed protein FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22860 hypothetical protein FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22870 expressed protein FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22880 expressed protein FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22890 transposon protein, putative, CACTA, En/Spm sub-class FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22900 transposon protein, putative, CACTA, En/Spm sub-class FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22920 expressed protein FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22940 no apical meristem protein, putative, expressed FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22960 retrotransposon protein, putative, Ty3-gypsy subclass FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22970 expressed protein FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g22990 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g23010 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g23030 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g23040 transposon protein, putative, Mutator sub-class, expressed FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g23060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g23070 retrotransposon protein, putative, Ty3-gypsy subclass FN3312-S Chr12 12882001 13045000 0 0 Deletion 162999 LOC_Os12g23080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 13537426 C-T 0 0 Single Base Substitution 0 Homo FN3312-S Chr12 1645515 1645517 0 0 Insertion 2 HET FN3312-S Chr12 17924485 A-C 0 0 Single Base Substitution 0 HET FN3312-S Chr12 19152912 G-C 0 0 Single Base Substitution 0 HET FN3312-S Chr12 21957031 Chr7 16820887 0 Translocation 0 FN3312-S Chr12 21957031 Chr7 16820887 0 Translocation 0 LOC_Os07g28740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr12 21957484 Chr7 16718400 0 Translocation 0 FN3312-S Chr12 22557341 C-T 0 0 Single Base Substitution 0 HET FN3312-S Chr12 25023683 Chr7 16731523 0 Translocation 0 LOC_Os07g28590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3312-S Chr12 25023683 Chr7 16731523 0 Translocation 0 LOC_Os12g40419 protein kinase domain containing protein, expressed FN3312-S Chr12 9590770 G-A 0 0 Single Base Substitution 0 HET FN3312-S Chr2 12670509 A-T 0 0 Single Base Substitution 0 HET FN3312-S Chr2 17390621 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g29270 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr2 26528761 C-T 0 0 Single Base Substitution 0 HET FN3312-S Chr2 4701108 T-A 0 0 Single Base Substitution 0 Homo FN3312-S Chr2 5999646 G-A 0 0 Single Base Substitution 0 HET FN3312-S Chr2 8759141 A-T 0 0 Single Base Substitution 0 HET FN3312-S Chr2 9925966 C-T 0 0 Single Base Substitution 0 HET FN3312-S Chr2 9925968 A-T 0 0 Single Base Substitution 0 HET FN3312-S Chr3 1368068 C-T 0 0 Single Base Substitution 0 HET FN3312-S Chr3 17680001 17703000 0 0 Deletion 22999 LOC_Os03g31044 expressed protein FN3312-S Chr3 17680001 17703000 0 0 Deletion 22999 LOC_Os03g31060 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr3 17680001 17703000 0 0 Deletion 22999 LOC_Os03g31070 protein kinase, putative, expressed FN3312-S Chr3 18006140 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g31560 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr3 18837799 C-T 0 0 Single Base Substitution 0 HET FN3312-S Chr3 29557725 T-G 0 0 Single Base Substitution 0 HET FN3312-S Chr3 4194344 T-A 0 0 Single Base Substitution 0 HET FN3312-S Chr3 6391001 6415000 0 0 Deletion 23999 LOC_Os03g12170 expressed protein FN3312-S Chr3 6391001 6415000 0 0 Deletion 23999 LOC_Os03g12180 MA3 domain containing protein, expressed FN3312-S Chr3 6391001 6415000 0 0 Deletion 23999 LOC_Os03g12190 OsFBX80 - F-box domain containing protein, expressed FN3312-S Chr3 6391001 6415000 0 0 Deletion 23999 LOC_Os03g12200 OsFBX81 - F-box domain containing protein, expressed FN3312-S Chr3 6391001 6415000 0 0 Deletion 23999 LOC_Os03g12210 expressed protein FN3312-S Chr3 6391001 6415000 0 0 Deletion 23999 LOC_Os03g12220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr4 10134864 G-T 0 0 Single Base Substitution 0 HET FN3312-S Chr4 10193667 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g18460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr4 11104468 G-A 0 0 Single Base Substitution 0 HET FN3312-S Chr4 1584047 1584048 0 0 Deletion 1 HET FN3312-S Chr4 16812167 C-A 0 0 Single Base Substitution 0 HET FN3312-S Chr5 12724559 Chr4 14980018 0 Translocation 0 FN3312-S Chr5 15990453 G-T 0 0 Single Base Substitution 0 HET FN3312-S Chr5 18355476 18355484 0 0 Deletion 8 frameshift_variant HET LOC_Os05g31550 disease resistance protein RGA4, putative, expressed FN3312-S Chr5 18358807 T-C 0 0 Single Base Substitution 0 HET FN3312-S Chr5 21571054 G-A 0 0 Single Base Substitution 0 HET FN3312-S Chr5 23156941 G-A 0 0 Single Base Substitution 0 HET FN3312-S Chr5 311092 311094 0 0 Insertion 2 HET FN3312-S Chr6 25878399 T-A 0 0 Single Base Substitution 0 HET FN3312-S Chr6 7605253 C-T 0 0 Single Base Substitution 0 HET FN3312-S Chr7 16718001 16732000 0 0 Deletion 13999 LOC_Os07g28570 leucine rich repeat protein, putative, expressed FN3312-S Chr7 16718001 16732000 0 0 Deletion 13999 LOC_Os07g28580 hypothetical protein FN3312-S Chr7 16718001 16732000 0 0 Deletion 13999 LOC_Os07g28590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3312-S Chr7 16731026 Chr4 22004519 0 Translocation 0 LOC_Os07g28590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3312-S Chr7 16731507 Chr4 22004495 0 Translocation 0 LOC_Os07g28590 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3312-S Chr7 16737231 16742578 0 0 Inversion 0 FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28610 expressed protein FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28614 expressed protein FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28620 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28640 expressed protein FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28644 expressed protein FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28650 transposon protein, putative, unclassified, expressed FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28660 ice-structuring glycoprotein precursor, putative, expressed FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28670 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28680 retrotransposon, putative, centromere-specific FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28690 hypothetical protein FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28700 expressed protein FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28710 60S acidic ribosomal protein, putative, expressed FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28720 expressed protein FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28730 retrotransposon protein, putative, unclassified FN3312-S Chr7 16739001 16827000 0 0 Deletion 87999 LOC_Os07g28740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3312-S Chr7 17906514 T-C 0 0 Single Base Substitution 0 HET FN3312-S Chr7 23299117 C-T 0 0 Single Base Substitution 0 HET FN3312-S Chr7 23646806 C-A 0 0 Single Base Substitution 0 HET FN3312-S Chr7 26783315 A-T 0 0 Single Base Substitution 0 HET FN3312-S Chr7 8550464 G-A 0 0 Single Base Substitution 0 HET FN3312-S Chr8 13671287 13671292 0 0 Deletion 5 HET FN3312-S Chr8 14614872 A-G 0 0 Single Base Substitution 0 HET FN3312-S Chr8 20978528 20978532 0 0 Deletion 4 HET FN3312-S Chr8 218732 218741 0 0 Deletion 9 HET FN3312-S Chr8 26412932 T-C 0 0 Single Base Substitution 0 HET FN3312-S Chr8 28054027 A-G 0 0 Single Base Substitution 0 HET FN3312-S Chr8 7824597 7824605 0 0 Deletion 8 HET FN3312-S Chr9 11964566 G-A 0 0 Single Base Substitution 0 HET FN3312-S Chr9 20449158 Chr4 10160156 0 Translocation 0 FN3312-S Chr9 20449158 Chr4 10160156 0 Translocation 0 LOC_Os04g18400 retrotransposon protein, putative, unclassified, expressed FN3312-S Chr9 6425151 G-C 0 0 Single Base Substitution 0 HET FN3312-S Chr9 8615574 8615975 0 0 Inversion 0 LOC_Os09g14550 RNA recognition motif containing protein, putative, expressed