FN3363-S Chr1 11755789 C-T 0 0 Single Base Substitution 0 HET FN3363-S Chr1 12857540 12857548 0 0 Deletion 8 Homo FN3363-S Chr1 28014504 A-C 0 0 Single Base Substitution 0 HET FN3363-S Chr1 3107626 G-A 0 0 Single Base Substitution 0 HET FN3363-S Chr1 35770112 35770114 0 0 Insertion 2 HET FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72380 expressed protein FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72390 NBS type disease resistance protein, putative, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72410 Leucine Rich Repeat family protein, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72420 C2 domain containing protein, putative, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72430 NADPH quinone oxidoreductase, putative, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72440 hypothetical protein FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72450 DNA binding protein, putative, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72460 NADPH quinone oxidoreductase, putative, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72470 expressed protein FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72480 zinc finger, C3HC4 type domain containing protein, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72490 LRP1, putative, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72500 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72510 eukaryotic aspartyl protease domain containing protein, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72520 phosphoesterase family protein, putative, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72530 OsCML31 - Calmodulin-related calcium sensor protein, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72540 OsCML23 - Calmodulin-related calcium sensor protein, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72550 OsCML19 - Calmodulin-related calcium sensor protein, expressed FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72560 expressed protein FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72570 expressed protein FN3363-S Chr1 41985001 42118000 0 0 Deletion 132999 LOC_Os01g72590 expressed protein FN3363-S Chr10 18581256 A-C 0 0 Single Base Substitution 0 Homo FN3363-S Chr10 1965424 G-A 0 0 Single Base Substitution 0 HET FN3363-S Chr10 22463614 C-T 0 0 Single Base Substitution 0 Homo FN3363-S Chr11 11159133 C-G 0 0 Single Base Substitution 0 HET FN3363-S Chr11 15247248 G-T 0 0 Single Base Substitution 0 Homo FN3363-S Chr11 19108003 G-A 0 0 Single Base Substitution 0 HET FN3363-S Chr11 21516504 21516514 0 0 Deletion 10 HET FN3363-S Chr11 22787867 22787871 0 0 Insertion 4 HET FN3363-S Chr11 27705538 27795824 0 0 Inversion 0 LOC_Os11g45790 NB-ARC domain containing protein, expressed FN3363-S Chr11 27705538 27795824 0 0 Inversion 0 LOC_Os11g45930 NBS-LRR type disease resistance protein, putative, expressed FN3363-S Chr12 12769483 12769489 0 0 Deletion 6 HET FN3363-S Chr12 14999558 15127670 0 0 Inversion 0 FN3363-S Chr12 14999558 15127670 0 0 Inversion 0 LOC_Os12g26040 expressed protein FN3363-S Chr12 14999734 15127675 0 0 Inversion 0 FN3363-S Chr12 14999734 15127675 0 0 Inversion 0 LOC_Os12g26040 expressed protein FN3363-S Chr12 15231764 Chr2 34497276 0 Translocation 0 LOC_Os02g56354 transposon protein, putative, unclassified, expressed FN3363-S Chr12 15231764 Chr2 34497276 0 Translocation 0 LOC_Os12g26150 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr12 15231800 Chr2 34494823 0 Translocation 0 LOC_Os02g56354 transposon protein, putative, unclassified, expressed FN3363-S Chr12 15231800 Chr2 34494823 0 Translocation 0 LOC_Os12g26150 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr12 25005644 G-T 0 0 Single Base Substitution 0 HET FN3363-S Chr12 3623529 3623530 0 0 Deletion 1 HET FN3363-S Chr12 6596931 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g12040 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3363-S Chr12 7125535 Chr3 4034908 0 Translocation 0 FN3363-S Chr12 8233157 C-A 0 0 Single Base Substitution 0 HET FN3363-S Chr12 8266637 C-G 0 0 Single Base Substitution 0 HET FN3363-S Chr2 12436184 G-A 0 0 Single Base Substitution 0 HET FN3363-S Chr2 15286055 15286058 0 0 Deletion 3 inframe_deletion Homo LOC_Os02g26040 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr2 23599789 T-A 0 0 Single Base Substitution 0 Homo FN3363-S Chr2 23783129 23783132 0 0 Deletion 3 Homo FN3363-S Chr2 24010305 24027417 0 0 Inversion 0 FN3363-S Chr2 24010305 24027417 0 0 Inversion 0 LOC_Os02g39764 expressed protein FN3363-S Chr2 24011001 24028000 0 0 Deletion 16999 LOC_Os02g39764 expressed protein FN3363-S Chr2 24027306 24027573 0 0 Inversion 0 LOC_Os02g39764 expressed protein FN3363-S Chr2 4100687 4606218 0 0 Inversion 0 FN3363-S Chr2 4100687 4606218 0 0 Inversion 0 LOC_Os02g08530 protein kinase family protein, putative, expressed FN3363-S Chr2 4100691 4606219 0 0 Inversion 0 FN3363-S Chr2 4100691 4606219 0 0 Inversion 0 LOC_Os02g08530 protein kinase family protein, putative, expressed FN3363-S Chr2 4910573 4910575 0 0 Deletion 2 frameshift_variant HET LOC_Os02g09530 expressed protein FN3363-S Chr2 9529083 9529088 0 0 Deletion 5 Homo FN3363-S Chr3 10935157 G-A 0 0 Single Base Substitution 0 HET FN3363-S Chr3 18818695 C-T 0 0 Single Base Substitution 0 HET FN3363-S Chr3 6594694 6594695 0 0 Deletion 1 Homo FN3363-S Chr4 10140370 C-T 0 0 Single Base Substitution 0 HET FN3363-S Chr4 12527738 12527749 0 0 Deletion 11 HET FN3363-S Chr4 1448465 2300969 0 0 Inversion 0 LOC_Os04g03370 cysteine-rich receptor-like protein kinase 41 precursor, putative, expressed FN3363-S Chr4 1448465 2300969 0 0 Inversion 0 LOC_Os04g04800 protein kinase domain containing protein, expressed FN3363-S Chr4 19950274 G-T 0 0 Single Base Substitution 0 Homo FN3363-S Chr4 2190161 C-T 0 0 Single Base Substitution 0 HET FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04790 expressed protein FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04800 protein kinase domain containing protein, expressed FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04810 retrotransposon protein, putative, Ty3-gypsy subclass FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04820 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04830 retrotransposon protein, putative, unclassified FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04840 retrotransposon protein, putative, unclassified FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04850 retrotransposon protein, putative, Ty3-gypsy subclass FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04870 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2297001 2357000 0 0 Deletion 59999 LOC_Os04g04880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04914 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04930 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04940 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04950 copper methylamine oxidase precursor, putative, expressed FN3363-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04970 expressed protein FN3363-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04980 pyridoxal-dependent decarboxylase protein, putative, expressed FN3363-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04990 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3363-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g04999 expressed protein FN3363-S Chr4 2366001 2432000 0 0 Deletion 65999 LOC_Os04g05010 CBS domain containing membrane protein, putative, expressed FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05030 serine-rich 25 kDa antigen protein, putative, expressed FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05040 transposon protein, putative, unclassified, expressed FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05050 pectate lyase precursor, putative, expressed FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05060 cytochrome P450 94A1, putative, expressed FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05070 expressed protein FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05080 vacuolar ATP synthase subunit F, putative, expressed FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05090 expressed protein FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05104 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05130 retrotransposon protein, putative, unclassified FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05140 retrotransposon protein, putative, unclassified FN3363-S Chr4 2439001 2565000 0 0 Deletion 125999 LOC_Os04g05150 retrotransposon protein, putative, unclassified FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05180 retrotransposon protein, putative, unclassified FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05220 retrotransposon protein, putative, Ty3-gypsy subclass FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05230 conserved hypothetical protein FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05240 retrotransposon protein, putative, unclassified FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05250 PE-PGRS family protein, putative, expressed FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05260 retrotransposon protein, putative, unclassified FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05270 retrotransposon protein, putative, unclassified FN3363-S Chr4 2579001 2631000 0 0 Deletion 51999 LOC_Os04g05280 transposon protein, putative, unclassified, expressed FN3363-S Chr4 27842885 G-A 0 0 Single Base Substitution 0 HET FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05650 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05700 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05720 transposon protein, putative, CACTA, En/Spm sub-class FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05750 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05760 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05770 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05780 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05790 retrotransposon protein, putative, unclassified FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05800 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05810 retrotransposon protein, putative, unclassified FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05820 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05830 retrotransposon, putative, centromere-specific FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05840 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05850 hypothetical protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05870 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05890 retrotransposon protein, putative, unclassified, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05910 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05930 transposon protein, putative, CACTA, En/Spm sub-class FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05940 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05950 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05960 retrotransposon protein, putative, Ty3-gypsy subclass FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g05990 transposon protein, putative, CACTA, En/Spm sub-class FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g06000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g06010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g06020 transposon protein, putative, CACTA, En/Spm sub-class FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g06030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g06050 expressed protein FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g06070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 2879001 3160000 0 0 Deletion 280999 LOC_Os04g06080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3363-S Chr4 30257881 30257892 0 0 Deletion 11 frameshift_variant HET LOC_Os04g51090 tRNA-splicing endonuclease positive effector-related, putative, expressed FN3363-S Chr4 31058884 G-T 0 0 Single Base Substitution 0 HET FN3363-S Chr4 34563303 T-A 0 0 Single Base Substitution 0 Homo FN3363-S Chr4 35225229 G-A 0 0 Single Base Substitution 0 HET FN3363-S Chr5 1224855 1224860 0 0 Deletion 5 HET FN3363-S Chr5 13786797 13786799 0 0 Insertion 2 Homo FN3363-S Chr5 2523450 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g05180 OsGH3.6 - Probable indole-3-acetic acid-amido synthetase, expressed FN3363-S Chr5 26950441 A-T 0 0 Single Base Substitution 0 Homo FN3363-S Chr5 6026598 A-T 0 0 Single Base Substitution 0 Homo FN3363-S Chr6 17600201 G-T 0 0 Single Base Substitution 0 HET FN3363-S Chr6 29569184 A-T 0 0 Single Base Substitution 0 Homo FN3363-S Chr6 4644156 4644161 0 0 Deletion 5 Homo FN3363-S Chr6 7925310 7925317 0 0 Deletion 7 Homo FN3363-S Chr7 10670537 T-G 0 0 Single Base Substitution 0 HET FN3363-S Chr7 11152621 11152629 0 0 Deletion 8 HET FN3363-S Chr7 21094369 G-A 0 0 Single Base Substitution 0 HET FN3363-S Chr7 6543338 C-T 0 0 Single Base Substitution 0 HET FN3363-S Chr7 6894587 C-T 0 0 Single Base Substitution 0 HET FN3363-S Chr7 9656252 T-C 0 0 Single Base Substitution 0 HET FN3363-S Chr8 15935222 Chr7 6242257 0 Translocation 0 FN3363-S Chr8 17058634 G-T 0 0 Single Base Substitution 0 HET FN3363-S Chr8 25110796 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g39660 cytochrome P450, putative, expressed FN3363-S Chr8 26979584 C-T 0 0 Single Base Substitution 0 HET FN3363-S Chr8 5506317 G-T 0 0 Single Base Substitution 0 HET FN3363-S Chr8 5506318 A-T 0 0 Single Base Substitution 0 HET FN3363-S Chr8 5506595 5506611 0 0 Deletion 16 HET FN3363-S Chr9 20993603 G-C 0 0 Single Base Substitution 0 Homo